1) Per-dataset sample inventory (compact lists)
1. Data_Tam_RNAseq_2024_AUM_MHB_Urine_on_ATCC19606
X101SC24105589-Z01-J001:AUM-1..3,MHB-1..3,Urine-1..3(all PE)X101SC25062155-Z01-J002:AUM-1..3,AUM-AZI-1..3,MH-1..3,MH-AZI-1..3,Urine-1..3,Urine-AZI-1..3(all PE)
2. Data_Tam_RNAseq_2025_LB-AB_IJ_W1_Y1_WT_vs_Mac-AB_IJ_W1_Y1_WT_on_ATCC19606
- LB:
LB-AB-1..3,LB-IJ-(1,2,4),LB-W1-1..3,LB-WT19606-2..4,LB-Y1-2..4 - Mac:
Mac-AB-1..3,Mac-IJ-(1,2,4),Mac-W1-1..3,Mac-WT19606-2..4,Mac-Y1-2..4
3. Data_Tam_RNAseq_2025_subMIC_exposure_on_ATCC19606
Each with reps -1..-3 (all PE):
0_5ΔIJ-17,0_5ΔIJ-24preWT-17,preWT-24preΔIJ-17,preΔIJ-24WT0_5-17,WT0_5-24WT-17,WT-24ΔIJ-17,ΔIJ-24
4. Data_Tam_DNAseq_2023_lab_strains
- A6WT – Acinetobacter baumannii ATCC19606
- A10CraA – Acinetobacter baumannii ATCC19606
- A12AYE – Acinetobacter baumannii AYE
- A1917978 – Acinetobacter baumannii ATCC17978
5. Data_Tam_DNAseq_2025_AYE-WT_Q_S_craA-Tig4_craA-1-Cm200_craA-2-Cm200
AYE-Q,AYE-S,AYE-WTonTig4,AYE-craAonTig4,AYE-craA-1onCm200,AYE-craA-2onCm200,clinical(all PE)
6. Data_Tam_DNAseq_2025_E.hormaechei-adeABadeIJ_adeIJK_CM1_CM2_on_ATCC19606
adeABadeIJ,adeIJK,CM1,CM2,HF(all PE)
7. Data_Tam_DNAseq_2025_ATCC19606-Y1Y2Y3Y4W1W2W3W4
- Illumina PE:
△adeIJ,Tig1,Tig2,W,W2,W3,W4,Y,Y2,Y3,Y4 -
Nanopore (
*_fastq_pass.tar):W1(3 tar files),W2(1),W3(2),W4(1)Y1(3),Y2(1),Y3(1),Y4(1)
8. Data_Tam_DNAseq_2026_19606deltaIJfluE
All PE; grouped by background:
19606△ABfluE:cef-1,cipro-2,dori-2,nitro-3,pip-1,polyB-3,tet-119606△IJfluE:cef-4,cipro-3,dori-1,nitro-3,pip-4,polyB-419606wtfluE:cef-1,cipro-2,dori-1,nitro-1,pip-4,polyB-4,tet-2
9. Data_Tam_DNAseq_2026_Acinetobacter_harbinensis
An6(PE)
10. Data_Tam_Metagenomics_2026
A1,A1a,A2,B1,B2(PE)
11. Data_Foong_RNAseq_2021_ATCC19606_Cm (mapping list provided)
- Batch1:
WT_1,WT_2B,C_1B,C_2,J_1,J_2 - Batch2:
Control,WT_1B,WT_2B,WT_3B,Cra_1,Cra_2,Cra_3,IJ_1B,IJ_2B,IJ_3 - Batch3:
adIJ_1,adIJ_2,crA2,crA_ab_1,crA_ab_2,crA_ab_3,adAB_1,adAB_2,adAB_ab1,adAB_ab2,adAB_ab3
12. Data_Foong_DNAseq_2025_AYE_Dark_vs_Light
Dark,Light(PE)
2) Dataset-level summary (quick lookup)
| Dataset folder | Year | Data type | Platform / format | Run / project IDs present | Samples (n) | Files (n) | Sample groups / notes |
|---|---|---|---|---|---|---|---|
Data_Tam_RNAseq_2024_AUM_MHB_Urine_on_ATCC19606/ |
2024 | RNA-seq | Illumina PE (*_1.fq.gz, *_2.fq.gz) |
X101SC24105589-Z01-J001, X101SC25062155-Z01-J002 |
27 | 54 | J001: AUM/MHB/Urine (each 1–3). J002: AUM, AUM-AZI, MH, MH-AZI, Urine, Urine-AZI (each 1–3). |
Data_Tam_RNAseq_2025_LB-AB_IJ_W1_Y1_WT_vs_Mac-AB_IJ_W1_Y1_WT_on_ATCC19606/ |
2025 | RNA-seq | Illumina PE | X101SC25015922-Z02-J002 |
30 | 60 | LB vs Mac sets; conditions AB, IJ, W1, Y1, WT19606 with listed replicates (mostly 1–3 or 2–4; IJ uses 1,2,4). |
Data_Tam_RNAseq_2025_subMIC_exposure_on_ATCC19606/ |
2025 | RNA-seq | Illumina PE | X101SC25062155-Z01-J001 |
36 | 72 | 12 condition blocks × 3 reps: preWT, preΔIJ, WT, ΔIJ, WT0_5, 0_5ΔIJ at timepoints 17 and 24. |
Data_Tam_DNAseq_2025_ATCC19606-Y1Y2Y3Y4W1W2W3W4/ |
2025 | DNA-seq | Illumina PE + Nanopore (*_fastq_pass.tar) |
Illumina: X101SC24065637-Z01-J001/J002; Nanopore: X101SC25080408-Z01-J001 |
11 (Illumina) + 13 tar archives | 22 + 13 | Illumina: △adeIJ, Tig1, Tig2, W, W2–W4, Y, Y2–Y4. Nanopore: W1(3), W2(1), W3(2), W4(1), Y1(3), Y2(1), Y3(1), Y4(1) tar files. |
Data_Tam_DNAseq_2025_AYE-WT_Q_S_craA-Tig4_craA-1-Cm200_craA-2-Cm200/ |
2025 | DNA-seq | Illumina PE | X101SC25015922-Z01-J001 |
7 | 14 | AYE variants: AYE-Q, AYE-S, AYE-WTonTig4, AYE-craAonTig4, AYE-craA-1onCm200, AYE-craA-2onCm200, plus clinical. |
Data_Tam_DNAseq_2025_E.hormaechei-adeABadeIJ_adeIJK_CM1_CM2 |
2025 | DNA-seq | Illumina PE | X101SC24115801-Z01-J001 |
5 | 10 | adeABadeIJ, adeIJK, CM1, CM2, HF. |
Data_Tam_DNAseq_2026_19606deltaIJfluE/ |
2026 | DNA-seq | Illumina PE | X101SC25116512-Z01-J003 |
20 | 40 | Three backgrounds: 19606△ABfluE* (7), 19606△IJfluE* (6), 19606wtfluE* (7) across drug tags (cef/cipro/dori/nitro/pip/polyB/tet) with replicate suffixes. |
Data_Tam_DNAseq_2026_Acinetobacter_harbinensis/ |
2026 | DNA-seq | Illumina PE | X101SC25116512-Z01-J002 |
1 | 2 | An6 (paired-end). |
Data_Tam_Metagenomics_2026/ |
2026 | Metagenomics | Illumina PE | X101SC25123808-Z01-J001 |
5 | 10 | A1, A1a, A2, B1, B2. |
Data_Foong_RNAseq_2021_ATCC19606_Cm/ |
2021 | RNA-seq | Illumina PE (symlink/mapping list shown) | (paths point to raw_data_batch1/2/3) |
27 | 54 | Batch1: WT/craA/adeIJ (each 2 reps). Batch2: Control + WT.abx + craA.abx + adeIJ.abx (various reps). Batch3: adeIJ, craA, craA.abx, adeAB, adeAB.abx (various reps). |
Data_Foong_DNAseq_2025_AYE_Dark_vs_Light/ |
2025 | DNA-seq | Illumina PE | X101SC25116512-Z01-J001 |
2 | 4 | Dark, Light. |
3) Complete list
Data_Tam_RNAseq_2024_AUM_MHB_Urine_on_ATCC19606/
./X101SC24105589-Z01-J001/01.RawData/AUM-1/AUM-1_1.fq.gz
./X101SC24105589-Z01-J001/01.RawData/AUM-1/AUM-1_2.fq.gz
./X101SC24105589-Z01-J001/01.RawData/AUM-2/AUM-2_1.fq.gz
./X101SC24105589-Z01-J001/01.RawData/AUM-2/AUM-2_2.fq.gz
./X101SC24105589-Z01-J001/01.RawData/AUM-3/AUM-3_1.fq.gz
./X101SC24105589-Z01-J001/01.RawData/AUM-3/AUM-3_2.fq.gz
./X101SC24105589-Z01-J001/01.RawData/MHB-1/MHB-1_1.fq.gz
./X101SC24105589-Z01-J001/01.RawData/MHB-1/MHB-1_2.fq.gz
./X101SC24105589-Z01-J001/01.RawData/MHB-2/MHB-2_1.fq.gz
./X101SC24105589-Z01-J001/01.RawData/MHB-2/MHB-2_2.fq.gz
./X101SC24105589-Z01-J001/01.RawData/MHB-3/MHB-3_1.fq.gz
./X101SC24105589-Z01-J001/01.RawData/MHB-3/MHB-3_2.fq.gz
./X101SC24105589-Z01-J001/01.RawData/Urine-1/Urine-1_1.fq.gz
./X101SC24105589-Z01-J001/01.RawData/Urine-1/Urine-1_2.fq.gz
./X101SC24105589-Z01-J001/01.RawData/Urine-2/Urine-2_1.fq.gz
./X101SC24105589-Z01-J001/01.RawData/Urine-2/Urine-2_2.fq.gz
./X101SC24105589-Z01-J001/01.RawData/Urine-3/Urine-3_1.fq.gz
./X101SC24105589-Z01-J001/01.RawData/Urine-3/Urine-3_2.fq.gz
./X101SC25062155-Z01-J002/01.RawData/AUM-1/AUM-1_1.fq.gz
./X101SC25062155-Z01-J002/01.RawData/AUM-1/AUM-1_2.fq.gz
./X101SC25062155-Z01-J002/01.RawData/AUM-2/AUM-2_1.fq.gz
./X101SC25062155-Z01-J002/01.RawData/AUM-2/AUM-2_2.fq.gz
./X101SC25062155-Z01-J002/01.RawData/AUM-3/AUM-3_1.fq.gz
./X101SC25062155-Z01-J002/01.RawData/AUM-3/AUM-3_2.fq.gz
./X101SC25062155-Z01-J002/01.RawData/AUM-AZI-1/AUM-AZI-1_1.fq.gz
./X101SC25062155-Z01-J002/01.RawData/AUM-AZI-1/AUM-AZI-1_2.fq.gz
./X101SC25062155-Z01-J002/01.RawData/AUM-AZI-2/AUM-AZI-2_1.fq.gz
./X101SC25062155-Z01-J002/01.RawData/AUM-AZI-2/AUM-AZI-2_2.fq.gz
./X101SC25062155-Z01-J002/01.RawData/AUM-AZI-3/AUM-AZI-3_1.fq.gz
./X101SC25062155-Z01-J002/01.RawData/AUM-AZI-3/AUM-AZI-3_2.fq.gz
./X101SC25062155-Z01-J002/01.RawData/MH-1/MH-1_1.fq.gz
./X101SC25062155-Z01-J002/01.RawData/MH-1/MH-1_2.fq.gz
./X101SC25062155-Z01-J002/01.RawData/MH-2/MH-2_1.fq.gz
./X101SC25062155-Z01-J002/01.RawData/MH-2/MH-2_2.fq.gz
./X101SC25062155-Z01-J002/01.RawData/MH-3/MH-3_1.fq.gz
./X101SC25062155-Z01-J002/01.RawData/MH-3/MH-3_2.fq.gz
./X101SC25062155-Z01-J002/01.RawData/MH-AZI-1/MH-AZI-1_1.fq.gz
./X101SC25062155-Z01-J002/01.RawData/MH-AZI-1/MH-AZI-1_2.fq.gz
./X101SC25062155-Z01-J002/01.RawData/MH-AZI-2/MH-AZI-2_1.fq.gz
./X101SC25062155-Z01-J002/01.RawData/MH-AZI-2/MH-AZI-2_2.fq.gz
./X101SC25062155-Z01-J002/01.RawData/MH-AZI-3/MH-AZI-3_1.fq.gz
./X101SC25062155-Z01-J002/01.RawData/MH-AZI-3/MH-AZI-3_2.fq.gz
./X101SC25062155-Z01-J002/01.RawData/Urine-1/Urine-1_1.fq.gz
./X101SC25062155-Z01-J002/01.RawData/Urine-1/Urine-1_2.fq.gz
./X101SC25062155-Z01-J002/01.RawData/Urine-2/Urine-2_1.fq.gz
./X101SC25062155-Z01-J002/01.RawData/Urine-2/Urine-2_2.fq.gz
./X101SC25062155-Z01-J002/01.RawData/Urine-3/Urine-3_1.fq.gz
./X101SC25062155-Z01-J002/01.RawData/Urine-3/Urine-3_2.fq.gz
./X101SC25062155-Z01-J002/01.RawData/Urine-AZI-1/Urine-AZI-1_1.fq.gz
./X101SC25062155-Z01-J002/01.RawData/Urine-AZI-1/Urine-AZI-1_2.fq.gz
./X101SC25062155-Z01-J002/01.RawData/Urine-AZI-2/Urine-AZI-2_1.fq.gz
./X101SC25062155-Z01-J002/01.RawData/Urine-AZI-2/Urine-AZI-2_2.fq.gz
./X101SC25062155-Z01-J002/01.RawData/Urine-AZI-3/Urine-AZI-3_1.fq.gz
./X101SC25062155-Z01-J002/01.RawData/Urine-AZI-3/Urine-AZI-3_2.fq.gz
Data_Tam_RNAseq_2025_LB-AB_IJ_W1_Y1_WT_vs_Mac-AB_IJ_W1_Y1_WT_on_ATCC19606/
./X101SC25015922-Z02-J002/01.RawData/LB-AB-1/LB-AB-1_1.fq.gz
./X101SC25015922-Z02-J002/01.RawData/LB-AB-1/LB-AB-1_2.fq.gz
./X101SC25015922-Z02-J002/01.RawData/LB-AB-2/LB-AB-2_1.fq.gz
./X101SC25015922-Z02-J002/01.RawData/LB-AB-2/LB-AB-2_2.fq.gz
./X101SC25015922-Z02-J002/01.RawData/LB-AB-3/LB-AB-3_1.fq.gz
./X101SC25015922-Z02-J002/01.RawData/LB-AB-3/LB-AB-3_2.fq.gz
./X101SC25015922-Z02-J002/01.RawData/LB-IJ-1/LB-IJ-1_1.fq.gz
./X101SC25015922-Z02-J002/01.RawData/LB-IJ-1/LB-IJ-1_2.fq.gz
./X101SC25015922-Z02-J002/01.RawData/LB-IJ-2/LB-IJ-2_1.fq.gz
./X101SC25015922-Z02-J002/01.RawData/LB-IJ-2/LB-IJ-2_2.fq.gz
./X101SC25015922-Z02-J002/01.RawData/LB-IJ-4/LB-IJ-4_1.fq.gz
./X101SC25015922-Z02-J002/01.RawData/LB-IJ-4/LB-IJ-4_2.fq.gz
./X101SC25015922-Z02-J002/01.RawData/LB-W1-1/LB-W1-1_1.fq.gz
./X101SC25015922-Z02-J002/01.RawData/LB-W1-1/LB-W1-1_2.fq.gz
./X101SC25015922-Z02-J002/01.RawData/LB-W1-2/LB-W1-2_1.fq.gz
./X101SC25015922-Z02-J002/01.RawData/LB-W1-2/LB-W1-2_2.fq.gz
./X101SC25015922-Z02-J002/01.RawData/LB-W1-3/LB-W1-3_1.fq.gz
./X101SC25015922-Z02-J002/01.RawData/LB-W1-3/LB-W1-3_2.fq.gz
./X101SC25015922-Z02-J002/01.RawData/LB-WT19606-2/LB-WT19606-2_1.fq.gz
./X101SC25015922-Z02-J002/01.RawData/LB-WT19606-2/LB-WT19606-2_2.fq.gz
./X101SC25015922-Z02-J002/01.RawData/LB-WT19606-3/LB-WT19606-3_1.fq.gz
./X101SC25015922-Z02-J002/01.RawData/LB-WT19606-3/LB-WT19606-3_2.fq.gz
./X101SC25015922-Z02-J002/01.RawData/LB-WT19606-4/LB-WT19606-4_1.fq.gz
./X101SC25015922-Z02-J002/01.RawData/LB-WT19606-4/LB-WT19606-4_2.fq.gz
./X101SC25015922-Z02-J002/01.RawData/LB-Y1-2/LB-Y1-2_1.fq.gz
./X101SC25015922-Z02-J002/01.RawData/LB-Y1-2/LB-Y1-2_2.fq.gz
./X101SC25015922-Z02-J002/01.RawData/LB-Y1-3/LB-Y1-3_1.fq.gz
./X101SC25015922-Z02-J002/01.RawData/LB-Y1-3/LB-Y1-3_2.fq.gz
./X101SC25015922-Z02-J002/01.RawData/LB-Y1-4/LB-Y1-4_1.fq.gz
./X101SC25015922-Z02-J002/01.RawData/LB-Y1-4/LB-Y1-4_2.fq.gz
./X101SC25015922-Z02-J002/01.RawData/Mac-AB-1/Mac-AB-1_1.fq.gz
./X101SC25015922-Z02-J002/01.RawData/Mac-AB-1/Mac-AB-1_2.fq.gz
./X101SC25015922-Z02-J002/01.RawData/Mac-AB-2/Mac-AB-2_1.fq.gz
./X101SC25015922-Z02-J002/01.RawData/Mac-AB-2/Mac-AB-2_2.fq.gz
./X101SC25015922-Z02-J002/01.RawData/Mac-AB-3/Mac-AB-3_1.fq.gz
./X101SC25015922-Z02-J002/01.RawData/Mac-AB-3/Mac-AB-3_2.fq.gz
./X101SC25015922-Z02-J002/01.RawData/Mac-IJ-1/Mac-IJ-1_1.fq.gz
./X101SC25015922-Z02-J002/01.RawData/Mac-IJ-1/Mac-IJ-1_2.fq.gz
./X101SC25015922-Z02-J002/01.RawData/Mac-IJ-2/Mac-IJ-2_1.fq.gz
./X101SC25015922-Z02-J002/01.RawData/Mac-IJ-2/Mac-IJ-2_2.fq.gz
./X101SC25015922-Z02-J002/01.RawData/Mac-IJ-4/Mac-IJ-4_1.fq.gz
./X101SC25015922-Z02-J002/01.RawData/Mac-IJ-4/Mac-IJ-4_2.fq.gz
./X101SC25015922-Z02-J002/01.RawData/Mac-W1-1/Mac-W1-1_1.fq.gz
./X101SC25015922-Z02-J002/01.RawData/Mac-W1-1/Mac-W1-1_2.fq.gz
./X101SC25015922-Z02-J002/01.RawData/Mac-W1-2/Mac-W1-2_1.fq.gz
./X101SC25015922-Z02-J002/01.RawData/Mac-W1-2/Mac-W1-2_2.fq.gz
./X101SC25015922-Z02-J002/01.RawData/Mac-W1-3/Mac-W1-3_1.fq.gz
./X101SC25015922-Z02-J002/01.RawData/Mac-W1-3/Mac-W1-3_2.fq.gz
./X101SC25015922-Z02-J002/01.RawData/Mac-WT19606-2/Mac-WT19606-2_1.fq.gz
./X101SC25015922-Z02-J002/01.RawData/Mac-WT19606-2/Mac-WT19606-2_2.fq.gz
./X101SC25015922-Z02-J002/01.RawData/Mac-WT19606-3/Mac-WT19606-3_1.fq.gz
./X101SC25015922-Z02-J002/01.RawData/Mac-WT19606-3/Mac-WT19606-3_2.fq.gz
./X101SC25015922-Z02-J002/01.RawData/Mac-WT19606-4/Mac-WT19606-4_1.fq.gz
./X101SC25015922-Z02-J002/01.RawData/Mac-WT19606-4/Mac-WT19606-4_2.fq.gz
./X101SC25015922-Z02-J002/01.RawData/Mac-Y1-2/Mac-Y1-2_1.fq.gz
./X101SC25015922-Z02-J002/01.RawData/Mac-Y1-2/Mac-Y1-2_2.fq.gz
./X101SC25015922-Z02-J002/01.RawData/Mac-Y1-3/Mac-Y1-3_1.fq.gz
./X101SC25015922-Z02-J002/01.RawData/Mac-Y1-3/Mac-Y1-3_2.fq.gz
./X101SC25015922-Z02-J002/01.RawData/Mac-Y1-4/Mac-Y1-4_1.fq.gz
./X101SC25015922-Z02-J002/01.RawData/Mac-Y1-4/Mac-Y1-4_2.fq.gz
Data_Tam_RNAseq_2025_subMIC_exposure_on_ATCC19606/
./X101SC25062155-Z01-J001/01.RawData/0_5ΔIJ-17-1/0_5ΔIJ-17-1_1.fq.gz
./X101SC25062155-Z01-J001/01.RawData/0_5ΔIJ-17-1/0_5ΔIJ-17-1_2.fq.gz
./X101SC25062155-Z01-J001/01.RawData/0_5ΔIJ-17-2/0_5ΔIJ-17-2_1.fq.gz
./X101SC25062155-Z01-J001/01.RawData/0_5ΔIJ-17-2/0_5ΔIJ-17-2_2.fq.gz
./X101SC25062155-Z01-J001/01.RawData/0_5ΔIJ-17-3/0_5ΔIJ-17-3_1.fq.gz
./X101SC25062155-Z01-J001/01.RawData/0_5ΔIJ-17-3/0_5ΔIJ-17-3_2.fq.gz
./X101SC25062155-Z01-J001/01.RawData/0_5ΔIJ-24-1/0_5ΔIJ-24-1_1.fq.gz
./X101SC25062155-Z01-J001/01.RawData/0_5ΔIJ-24-1/0_5ΔIJ-24-1_2.fq.gz
./X101SC25062155-Z01-J001/01.RawData/0_5ΔIJ-24-2/0_5ΔIJ-24-2_1.fq.gz
./X101SC25062155-Z01-J001/01.RawData/0_5ΔIJ-24-2/0_5ΔIJ-24-2_2.fq.gz
./X101SC25062155-Z01-J001/01.RawData/0_5ΔIJ-24-3/0_5ΔIJ-24-3_1.fq.gz
./X101SC25062155-Z01-J001/01.RawData/0_5ΔIJ-24-3/0_5ΔIJ-24-3_2.fq.gz
./X101SC25062155-Z01-J001/01.RawData/preWT-17-1/preWT-17-1_1.fq.gz
./X101SC25062155-Z01-J001/01.RawData/preWT-17-1/preWT-17-1_2.fq.gz
./X101SC25062155-Z01-J001/01.RawData/preWT-17-2/preWT-17-2_1.fq.gz
./X101SC25062155-Z01-J001/01.RawData/preWT-17-2/preWT-17-2_2.fq.gz
./X101SC25062155-Z01-J001/01.RawData/preWT-17-3/preWT-17-3_1.fq.gz
./X101SC25062155-Z01-J001/01.RawData/preWT-17-3/preWT-17-3_2.fq.gz
./X101SC25062155-Z01-J001/01.RawData/preWT-24-1/preWT-24-1_1.fq.gz
./X101SC25062155-Z01-J001/01.RawData/preWT-24-1/preWT-24-1_2.fq.gz
./X101SC25062155-Z01-J001/01.RawData/preWT-24-2/preWT-24-2_1.fq.gz
./X101SC25062155-Z01-J001/01.RawData/preWT-24-2/preWT-24-2_2.fq.gz
./X101SC25062155-Z01-J001/01.RawData/preWT-24-3/preWT-24-3_1.fq.gz
./X101SC25062155-Z01-J001/01.RawData/preWT-24-3/preWT-24-3_2.fq.gz
./X101SC25062155-Z01-J001/01.RawData/preΔIJ-17-1/preΔIJ-17-1_1.fq.gz
./X101SC25062155-Z01-J001/01.RawData/preΔIJ-17-1/preΔIJ-17-1_2.fq.gz
./X101SC25062155-Z01-J001/01.RawData/preΔIJ-17-2/preΔIJ-17-2_1.fq.gz
./X101SC25062155-Z01-J001/01.RawData/preΔIJ-17-2/preΔIJ-17-2_2.fq.gz
./X101SC25062155-Z01-J001/01.RawData/preΔIJ-17-3/preΔIJ-17-3_1.fq.gz
./X101SC25062155-Z01-J001/01.RawData/preΔIJ-17-3/preΔIJ-17-3_2.fq.gz
./X101SC25062155-Z01-J001/01.RawData/preΔIJ-24-1/preΔIJ-24-1_1.fq.gz
./X101SC25062155-Z01-J001/01.RawData/preΔIJ-24-1/preΔIJ-24-1_2.fq.gz
./X101SC25062155-Z01-J001/01.RawData/preΔIJ-24-2/preΔIJ-24-2_1.fq.gz
./X101SC25062155-Z01-J001/01.RawData/preΔIJ-24-2/preΔIJ-24-2_2.fq.gz
./X101SC25062155-Z01-J001/01.RawData/preΔIJ-24-3/preΔIJ-24-3_1.fq.gz
./X101SC25062155-Z01-J001/01.RawData/preΔIJ-24-3/preΔIJ-24-3_2.fq.gz
./X101SC25062155-Z01-J001/01.RawData/WT0_5-17-1/WT0_5-17-1_1.fq.gz
./X101SC25062155-Z01-J001/01.RawData/WT0_5-17-1/WT0_5-17-1_2.fq.gz
./X101SC25062155-Z01-J001/01.RawData/WT0_5-17-2/WT0_5-17-2_1.fq.gz
./X101SC25062155-Z01-J001/01.RawData/WT0_5-17-2/WT0_5-17-2_2.fq.gz
./X101SC25062155-Z01-J001/01.RawData/WT0_5-17-3/WT0_5-17-3_1.fq.gz
./X101SC25062155-Z01-J001/01.RawData/WT0_5-17-3/WT0_5-17-3_2.fq.gz
./X101SC25062155-Z01-J001/01.RawData/WT0_5-24-1/WT0_5-24-1_1.fq.gz
./X101SC25062155-Z01-J001/01.RawData/WT0_5-24-1/WT0_5-24-1_2.fq.gz
./X101SC25062155-Z01-J001/01.RawData/WT0_5-24-2/WT0_5-24-2_1.fq.gz
./X101SC25062155-Z01-J001/01.RawData/WT0_5-24-2/WT0_5-24-2_2.fq.gz
./X101SC25062155-Z01-J001/01.RawData/WT0_5-24-3/WT0_5-24-3_1.fq.gz
./X101SC25062155-Z01-J001/01.RawData/WT0_5-24-3/WT0_5-24-3_2.fq.gz
./X101SC25062155-Z01-J001/01.RawData/WT-17-1/WT-17-1_1.fq.gz
./X101SC25062155-Z01-J001/01.RawData/WT-17-1/WT-17-1_2.fq.gz
./X101SC25062155-Z01-J001/01.RawData/WT-17-2/WT-17-2_1.fq.gz
./X101SC25062155-Z01-J001/01.RawData/WT-17-2/WT-17-2_2.fq.gz
./X101SC25062155-Z01-J001/01.RawData/WT-17-3/WT-17-3_1.fq.gz
./X101SC25062155-Z01-J001/01.RawData/WT-17-3/WT-17-3_2.fq.gz
./X101SC25062155-Z01-J001/01.RawData/WT-24-1/WT-24-1_1.fq.gz
./X101SC25062155-Z01-J001/01.RawData/WT-24-1/WT-24-1_2.fq.gz
./X101SC25062155-Z01-J001/01.RawData/WT-24-2/WT-24-2_1.fq.gz
./X101SC25062155-Z01-J001/01.RawData/WT-24-2/WT-24-2_2.fq.gz
./X101SC25062155-Z01-J001/01.RawData/WT-24-3/WT-24-3_1.fq.gz
./X101SC25062155-Z01-J001/01.RawData/WT-24-3/WT-24-3_2.fq.gz
./X101SC25062155-Z01-J001/01.RawData/ΔIJ-17-1/ΔIJ-17-1_1.fq.gz
./X101SC25062155-Z01-J001/01.RawData/ΔIJ-17-1/ΔIJ-17-1_2.fq.gz
./X101SC25062155-Z01-J001/01.RawData/ΔIJ-17-2/ΔIJ-17-2_1.fq.gz
./X101SC25062155-Z01-J001/01.RawData/ΔIJ-17-2/ΔIJ-17-2_2.fq.gz
./X101SC25062155-Z01-J001/01.RawData/ΔIJ-17-3/ΔIJ-17-3_1.fq.gz
./X101SC25062155-Z01-J001/01.RawData/ΔIJ-17-3/ΔIJ-17-3_2.fq.gz
./X101SC25062155-Z01-J001/01.RawData/ΔIJ-24-1/ΔIJ-24-1_1.fq.gz
./X101SC25062155-Z01-J001/01.RawData/ΔIJ-24-1/ΔIJ-24-1_2.fq.gz
./X101SC25062155-Z01-J001/01.RawData/ΔIJ-24-2/ΔIJ-24-2_1.fq.gz
./X101SC25062155-Z01-J001/01.RawData/ΔIJ-24-2/ΔIJ-24-2_2.fq.gz
./X101SC25062155-Z01-J001/01.RawData/ΔIJ-24-3/ΔIJ-24-3_1.fq.gz
./X101SC25062155-Z01-J001/01.RawData/ΔIJ-24-3/ΔIJ-24-3_2.fq.gz
Data_Tam_DNAseq_2025_ATCC19606-Y1Y2Y3Y4W1W2W3W4/
Illumina short-sequencing:
./X101SC24065637-Z01-J001/01.RawData/△adeIJ/△adeIJ_1.fq.gz
./X101SC24065637-Z01-J001/01.RawData/△adeIJ/△adeIJ_2.fq.gz
./X101SC24065637-Z01-J001/01.RawData/Tig1/Tig1_1.fq.gz
./X101SC24065637-Z01-J001/01.RawData/Tig1/Tig1_2.fq.gz
./X101SC24065637-Z01-J001/01.RawData/Tig2/Tig2_1.fq.gz
./X101SC24065637-Z01-J001/01.RawData/Tig2/Tig2_2.fq.gz
./X101SC24065637-Z01-J001/01.RawData/W/W_1.fq.gz
./X101SC24065637-Z01-J001/01.RawData/W/W_2.fq.gz
./X101SC24065637-Z01-J002/01.RawData/W2/W2_1.fq.gz
./X101SC24065637-Z01-J002/01.RawData/W2/W2_2.fq.gz
./X101SC24065637-Z01-J002/01.RawData/W3/W3_1.fq.gz
./X101SC24065637-Z01-J002/01.RawData/W3/W3_2.fq.gz
./X101SC24065637-Z01-J002/01.RawData/W4/W4_1.fq.gz
./X101SC24065637-Z01-J002/01.RawData/W4/W4_2.fq.gz
./X101SC24065637-Z01-J001/01.RawData/Y/Y_1.fq.gz
./X101SC24065637-Z01-J001/01.RawData/Y/Y_2.fq.gz
./X101SC24065637-Z01-J002/01.RawData/Y2/Y2_1.fq.gz
./X101SC24065637-Z01-J002/01.RawData/Y2/Y2_2.fq.gz
./X101SC24065637-Z01-J002/01.RawData/Y3/Y3_1.fq.gz
./X101SC24065637-Z01-J002/01.RawData/Y3/Y3_2.fq.gz
./X101SC24065637-Z01-J002/01.RawData/Y4/Y4_1.fq.gz
./X101SC24065637-Z01-J002/01.RawData/Y4/Y4_2.fq.gz
Nanopore long-sequencing:
./X101SC25080408-Z01-J001/Release-X101SC25080408-Z01-J001-20251009/Data-X101SC25080408-Z01-J001/W1/0710_2F_PBG50143_74807b09/W1_fastq_pass.tar
./X101SC25080408-Z01-J001/Release-X101SC25080408-Z01-J001-20251009/Data-X101SC25080408-Z01-J001/W1/0629_2H_PBG55359_f19e323f/W1_fastq_pass.tar
./X101SC25080408-Z01-J001/Release-X101SC25080408-Z01-J001-20251009/Data-X101SC25080408-Z01-J001/W1/0631_2C_PBG05153_55abe88b/W1_fastq_pass.tar
./X101SC25080408-Z01-J001/Release-X101SC25080408-Z01-J001-20251009/Data-X101SC25080408-Z01-J001/W2/0620_2C_PBG17000_6bfd0048/W2_fastq_pass.tar
./X101SC25080408-Z01-J001/Release-X101SC25080408-Z01-J001-20251009/Data-X101SC25080408-Z01-J001/W3/0710_2F_PBG50143_74807b09/W3_fastq_pass.tar
./X101SC25080408-Z01-J001/Release-X101SC25080408-Z01-J001-20251009/Data-X101SC25080408-Z01-J001/W3/0629_2H_PBG55359_f19e323f/W3_fastq_pass.tar
./X101SC25080408-Z01-J001/Release-X101SC25080408-Z01-J001-20251009/Data-X101SC25080408-Z01-J001/W4/0620_2C_PBG17000_6bfd0048/W4_fastq_pass.tar
./X101SC25080408-Z01-J001/Release-X101SC25080408-Z01-J001-20251009/Data-X101SC25080408-Z01-J001/Y1/0655_3B_PBE70655_6bbd09a4/Y1_fastq_pass.tar
./X101SC25080408-Z01-J001/Release-X101SC25080408-Z01-J001-20251009/Data-X101SC25080408-Z01-J001/Y1/0620_2C_PBG17000_6bfd0048/Y1_fastq_pass.tar
./X101SC25080408-Z01-J001/Release-X101SC25080408-Z01-J001-20251009/Data-X101SC25080408-Z01-J001/Y1/0631_2C_PBG05153_55abe88b/Y1_fastq_pass.tar
./X101SC25080408-Z01-J001/Release-X101SC25080408-Z01-J001-20251009/Data-X101SC25080408-Z01-J001/Y2/0620_2C_PBG17000_6bfd0048/Y2_fastq_pass.tar
./X101SC25080408-Z01-J001/Release-X101SC25080408-Z01-J001-20251009/Data-X101SC25080408-Z01-J001/Y3/0620_2C_PBG17000_6bfd0048/Y3_fastq_pass.tar
./X101SC25080408-Z01-J001/Release-X101SC25080408-Z01-J001-20251009/Data-X101SC25080408-Z01-J001/Y4/0620_2C_PBG17000_6bfd0048/Y4_fastq_pass.tar
Data_Tam_DNAseq_2025_AYE-WT_Q_S_craA-Tig4_craA-1-Cm200_craA-2-Cm200/
./X101SC25015922-Z01-J001/01.RawData/AYE-craA-1onCm200/AYE-craA-1onCm200_1.fq.gz
./X101SC25015922-Z01-J001/01.RawData/AYE-craA-1onCm200/AYE-craA-1onCm200_2.fq.gz
./X101SC25015922-Z01-J001/01.RawData/AYE-craA-2onCm200/AYE-craA-2onCm200_1.fq.gz
./X101SC25015922-Z01-J001/01.RawData/AYE-craA-2onCm200/AYE-craA-2onCm200_2.fq.gz
./X101SC25015922-Z01-J001/01.RawData/AYE-craAonTig4/AYE-craAonTig4_1.fq.gz
./X101SC25015922-Z01-J001/01.RawData/AYE-craAonTig4/AYE-craAonTig4_2.fq.gz
./X101SC25015922-Z01-J001/01.RawData/AYE-Q/AYE-Q_1.fq.gz
./X101SC25015922-Z01-J001/01.RawData/AYE-Q/AYE-Q_2.fq.gz
./X101SC25015922-Z01-J001/01.RawData/AYE-S/AYE-S_1.fq.gz
./X101SC25015922-Z01-J001/01.RawData/AYE-S/AYE-S_2.fq.gz
./X101SC25015922-Z01-J001/01.RawData/AYE-WTonTig4/AYE-WTonTig4_1.fq.gz
./X101SC25015922-Z01-J001/01.RawData/AYE-WTonTig4/AYE-WTonTig4_2.fq.gz
./X101SC25015922-Z01-J001/01.RawData/clinical/clinical_1.fq.gz
./X101SC25015922-Z01-J001/01.RawData/clinical/clinical_2.fq.gz
Data_Tam_DNAseq_2025_E.hormaechei-adeABadeIJ_adeIJK_CM1_CM2
./X101SC24115801-Z01-J001/01.RawData/adeABadeIJ/adeABadeIJ_1.fq.gz
./X101SC24115801-Z01-J001/01.RawData/adeABadeIJ/adeABadeIJ_2.fq.gz
./X101SC24115801-Z01-J001/01.RawData/adeIJK/adeIJK_1.fq.gz
./X101SC24115801-Z01-J001/01.RawData/adeIJK/adeIJK_2.fq.gz
./X101SC24115801-Z01-J001/01.RawData/CM1/CM1_1.fq.gz
./X101SC24115801-Z01-J001/01.RawData/CM1/CM1_2.fq.gz
./X101SC24115801-Z01-J001/01.RawData/CM2/CM2_1.fq.gz
./X101SC24115801-Z01-J001/01.RawData/CM2/CM2_2.fq.gz
./X101SC24115801-Z01-J001/01.RawData/HF/HF_1.fq.gz
./X101SC24115801-Z01-J001/01.RawData/HF/HF_2.fq.gz
Data_Tam_DNAseq_2026_19606deltaIJfluE/
./X101SC25116512-Z01-J003/01.RawData/19606△ABfluEcef-1/19606△ABfluEcef-1_1.fq.gz
./X101SC25116512-Z01-J003/01.RawData/19606△ABfluEcef-1/19606△ABfluEcef-1_2.fq.gz
./X101SC25116512-Z01-J003/01.RawData/19606△ABfluEcipro-2/19606△ABfluEcipro-2_1.fq.gz
./X101SC25116512-Z01-J003/01.RawData/19606△ABfluEcipro-2/19606△ABfluEcipro-2_2.fq.gz
./X101SC25116512-Z01-J003/01.RawData/19606△ABfluEdori-2/19606△ABfluEdori-2_1.fq.gz
./X101SC25116512-Z01-J003/01.RawData/19606△ABfluEdori-2/19606△ABfluEdori-2_2.fq.gz
./X101SC25116512-Z01-J003/01.RawData/19606△ABfluEnitro-3/19606△ABfluEnitro-3_1.fq.gz
./X101SC25116512-Z01-J003/01.RawData/19606△ABfluEnitro-3/19606△ABfluEnitro-3_2.fq.gz
./X101SC25116512-Z01-J003/01.RawData/19606△ABfluEpip-1/19606△ABfluEpip-1_1.fq.gz
./X101SC25116512-Z01-J003/01.RawData/19606△ABfluEpip-1/19606△ABfluEpip-1_2.fq.gz
./X101SC25116512-Z01-J003/01.RawData/19606△ABfluEpolyB-3/19606△ABfluEpolyB-3_1.fq.gz
./X101SC25116512-Z01-J003/01.RawData/19606△ABfluEpolyB-3/19606△ABfluEpolyB-3_2.fq.gz
./X101SC25116512-Z01-J003/01.RawData/19606△ABfluEtet-1/19606△ABfluEtet-1_1.fq.gz
./X101SC25116512-Z01-J003/01.RawData/19606△ABfluEtet-1/19606△ABfluEtet-1_2.fq.gz
./X101SC25116512-Z01-J003/01.RawData/19606△IJfluEcef-4/19606△IJfluEcef-4_1.fq.gz
./X101SC25116512-Z01-J003/01.RawData/19606△IJfluEcef-4/19606△IJfluEcef-4_2.fq.gz
./X101SC25116512-Z01-J003/01.RawData/19606△IJfluEcipro-3/19606△IJfluEcipro-3_1.fq.gz
./X101SC25116512-Z01-J003/01.RawData/19606△IJfluEcipro-3/19606△IJfluEcipro-3_2.fq.gz
./X101SC25116512-Z01-J003/01.RawData/19606△IJfluEdori-1/19606△IJfluEdori-1_1.fq.gz
./X101SC25116512-Z01-J003/01.RawData/19606△IJfluEdori-1/19606△IJfluEdori-1_2.fq.gz
./X101SC25116512-Z01-J003/01.RawData/19606△IJfluEnitro-3/19606△IJfluEnitro-3_1.fq.gz
./X101SC25116512-Z01-J003/01.RawData/19606△IJfluEnitro-3/19606△IJfluEnitro-3_2.fq.gz
./X101SC25116512-Z01-J003/01.RawData/19606△IJfluEpip-4/19606△IJfluEpip-4_1.fq.gz
./X101SC25116512-Z01-J003/01.RawData/19606△IJfluEpip-4/19606△IJfluEpip-4_2.fq.gz
./X101SC25116512-Z01-J003/01.RawData/19606△IJfluEpolyB-4/19606△IJfluEpolyB-4_1.fq.gz
./X101SC25116512-Z01-J003/01.RawData/19606△IJfluEpolyB-4/19606△IJfluEpolyB-4_2.fq.gz
./X101SC25116512-Z01-J003/01.RawData/19606wtfluEcef-1/19606wtfluEcef-1_1.fq.gz
./X101SC25116512-Z01-J003/01.RawData/19606wtfluEcef-1/19606wtfluEcef-1_2.fq.gz
./X101SC25116512-Z01-J003/01.RawData/19606wtfluEcipro-2/19606wtfluEcipro-2_1.fq.gz
./X101SC25116512-Z01-J003/01.RawData/19606wtfluEcipro-2/19606wtfluEcipro-2_2.fq.gz
./X101SC25116512-Z01-J003/01.RawData/19606wtfluEdori-1/19606wtfluEdori-1_1.fq.gz
./X101SC25116512-Z01-J003/01.RawData/19606wtfluEdori-1/19606wtfluEdori-1_2.fq.gz
./X101SC25116512-Z01-J003/01.RawData/19606wtfluEnitro-1/19606wtfluEnitro-1_1.fq.gz
./X101SC25116512-Z01-J003/01.RawData/19606wtfluEnitro-1/19606wtfluEnitro-1_2.fq.gz
./X101SC25116512-Z01-J003/01.RawData/19606wtfluEpip-4/19606wtfluEpip-4_1.fq.gz
./X101SC25116512-Z01-J003/01.RawData/19606wtfluEpip-4/19606wtfluEpip-4_2.fq.gz
./X101SC25116512-Z01-J003/01.RawData/19606wtfluEpolyB-4/19606wtfluEpolyB-4_1.fq.gz
./X101SC25116512-Z01-J003/01.RawData/19606wtfluEpolyB-4/19606wtfluEpolyB-4_2.fq.gz
./X101SC25116512-Z01-J003/01.RawData/19606wtfluEtet-2/19606wtfluEtet-2_1.fq.gz
./X101SC25116512-Z01-J003/01.RawData/19606wtfluEtet-2/19606wtfluEtet-2_2.fq.gz
Data_Tam_DNAseq_2026_Acinetobacter_harbinensis/
./X101SC25116512-Z01-J002/01.RawData/An6/An6_1.fq.gz
./X101SC25116512-Z01-J002/01.RawData/An6/An6_2.fq.gz
Data_Tam_Metagenomics_2026/
./X101SC25123808-Z01-J001/01.RawData/A1/A1_1.fq.gz
./X101SC25123808-Z01-J001/01.RawData/A1/A1_2.fq.gz
./X101SC25123808-Z01-J001/01.RawData/A1a/A1a_1.fq.gz
./X101SC25123808-Z01-J001/01.RawData/A1a/A1a_2.fq.gz
./X101SC25123808-Z01-J001/01.RawData/A2/A2_1.fq.gz
./X101SC25123808-Z01-J001/01.RawData/A2/A2_2.fq.gz
./X101SC25123808-Z01-J001/01.RawData/B1/B1_1.fq.gz
./X101SC25123808-Z01-J001/01.RawData/B1/B1_2.fq.gz
./X101SC25123808-Z01-J001/01.RawData/B2/B2_1.fq.gz
./X101SC25123808-Z01-J001/01.RawData/B2/B2_2.fq.gz
Data_Foong_RNAseq_2021_ATCC19606_Cm/
wt_r1_R1.fq.gz -> ../raw_data_batch1/WT_1_1.fq.gz
wt_r1_R2.fq.gz -> ../raw_data_batch1/WT_1_2.fq.gz
wt_r2_R1.fq.gz -> ../raw_data_batch1/WT_2B_1.fq.gz
wt_r2_R2.fq.gz -> ../raw_data_batch1/WT_2B_2.fq.gz
craA_r1_R1.fq.gz -> ../raw_data_batch1/C_1B_1.fq.gz
craA_r1_R2.fq.gz -> ../raw_data_batch1/C_1B_2.fq.gz
craA_r2_R1.fq.gz -> ../raw_data_batch1/C_2_1.fq.gz
craA_r2_R2.fq.gz -> ../raw_data_batch1/C_2_2.fq.gz
adeIJ_r1_R1.fq.gz -> ../raw_data_batch1/J_1_1.fq.gz
adeIJ_r1_R2.fq.gz -> ../raw_data_batch1/J_1_2.fq.gz
adeIJ_r2_R1.fq.gz -> ../raw_data_batch1/J_2_1.fq.gz
adeIJ_r2_R2.fq.gz -> ../raw_data_batch1/J_2_2.fq.gz
wt_r3_R1.fq.gz -> ../raw_data_batch2/Control_1.fq.gz
wt_r3_R2.fq.gz -> ../raw_data_batch2/Control_2.fq.gz
wt.abx_r1_R1.fq.gz -> ../raw_data_batch2/WT_1B_1.fq.gz
wt.abx_r1_R2.fq.gz -> ../raw_data_batch2/WT_1B_2.fq.gz
wt.abx_r2_R1.fq.gz -> ../raw_data_batch2/WT_2B_1.fq.gz
wt.abx_r2_R2.fq.gz -> ../raw_data_batch2/WT_2B_2.fq.gz
wt.abx_r3_R1.fq.gz -> ../raw_data_batch2/WT_3B_1.fq.gz
wt.abx_r3_R2.fq.gz -> ../raw_data_batch2/WT_3B_2.fq.gz
craA.abx_r1_R1.fq.gz -> ../raw_data_batch2/Cra_1_1.fq.gz
craA.abx_r1_R2.fq.gz -> ../raw_data_batch2/Cra_1_2.fq.gz
craA.abx_r2_R1.fq.gz -> ../raw_data_batch2/Cra_2_1.fq.gz
craA.abx_r2_R2.fq.gz -> ../raw_data_batch2/Cra_2_2.fq.gz
craA.abx_r3_R1.fq.gz -> ../raw_data_batch2/Cra_3_1.fq.gz
craA.abx_r3_R2.fq.gz -> ../raw_data_batch2/Cra_3_2.fq.gz
adeIJ.abx_r1_R1.fq.gz -> ../raw_data_batch2/IJ_1B_1.fq.gz
adeIJ.abx_r1_R2.fq.gz -> ../raw_data_batch2/IJ_1B_2.fq.gz
adeIJ.abx_r2_R1.fq.gz -> ../raw_data_batch2/IJ_2B_1.fq.gz
adeIJ.abx_r2_R2.fq.gz -> ../raw_data_batch2/IJ_2B_2.fq.gz
adeIJ.abx_r3_R1.fq.gz -> ../raw_data_batch2/IJ_3_1.fq.gz
adeIJ.abx_r3_R2.fq.gz -> ../raw_data_batch2/IJ_3_2.fq.gz
adeIJ_r3_R1.fq.gz -> ../raw_data_batch3/adIJ_1_1.fq.gz
adeIJ_r3_R2.fq.gz -> ../raw_data_batch3/adIJ_1_2.fq.gz
adeIJ_r4_R1.fq.gz -> ../raw_data_batch3/adIJ_2_1.fq.gz
adeIJ_r4_R2.fq.gz -> ../raw_data_batch3/adIJ_2_2.fq.gz
craA_r3_R1.fq.gz -> ../raw_data_batch3/crA2_1.fq.gz
craA_r3_R2.fq.gz -> ../raw_data_batch3/crA2_2.fq.gz
craA.abx_r4_R1.fq.gz -> ../raw_data_batch3/crA_ab_1_1.fq.gz
craA.abx_r4_R2.fq.gz -> ../raw_data_batch3/crA_ab_1_2.fq.gz
craA.abx_r5_R1.fq.gz -> ../raw_data_batch3/crA_ab_2_1.fq.gz
craA.abx_r5_R2.fq.gz -> ../raw_data_batch3/crA_ab_2_2.fq.gz
craA.abx_r6_R1.fq.gz -> ../raw_data_batch3/crA_ab_3_1.fq.gz
craA.abx_r6_R2.fq.gz -> ../raw_data_batch3/crA_ab_3_2.fq.gz
adeAB_r1_R1.fq.gz -> ../raw_data_batch3/adAB_1_1.fq.gz
adeAB_r1_R2.fq.gz -> ../raw_data_batch3/adAB_1_2.fq.gz
adeAB_r2_R1.fq.gz -> ../raw_data_batch3/adAB_2_1.fq.gz
adeAB_r2_R2.fq.gz -> ../raw_data_batch3/adAB_2_2.fq.gz
adeAB.abx_r1_R1.fq.gz -> ../raw_data_batch3/adAB_ab1_1.fq.gz
adeAB.abx_r1_R2.fq.gz -> ../raw_data_batch3/adAB_ab1_2.fq.gz
adeAB.abx_r2_R1.fq.gz -> ../raw_data_batch3/adAB_ab2_1.fq.gz
adeAB.abx_r2_R2.fq.gz -> ../raw_data_batch3/adAB_ab2_2.fq.gz
adeAB.abx_r3_R1.fq.gz -> ../raw_data_batch3/adAB_ab3_1.fq.gz
adeAB.abx_r3_R2.fq.gz -> ../raw_data_batch3/adAB_ab3_2.fq.gz
Data_Foong_DNAseq_2025_AYE_Dark_vs_Light/
./X101SC25116512-Z01-J001/01.RawData/Dark/Dark_1.fq.gz
./X101SC25116512-Z01-J001/01.RawData/Dark/Dark_2.fq.gz
./X101SC25116512-Z01-J001/01.RawData/Light/Light_1.fq.gz
./X101SC25116512-Z01-J001/01.RawData/Light/Light_2.fq.gz