Click here (http://xgenes.com/course/phyloseq/) and Click here (http://xgenes.com/course/phyloseq2/) to get started.

Phyloseq is an R package for the analysis of microbiome data. Microbiome data is generated from high-throughput sequencing technologies such as 16S rRNA gene sequencing or metagenomic sequencing, which allow for the identification and quantification of the microbial species present in a given sample.

Phyloseq provides a framework for importing, analyzing, and visualizing microbiome data in R. It allows users to perform a wide range of analyses, including alpha and beta diversity analyses, differential abundance testing, and network analysis. Additionally, Phyloseq integrates with other R packages for statistical analysis and data visualization.

Overall, Phyloseq provides a powerful toolset for exploring microbiome data and generating insights into the microbial communities present in a given sample.