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/media/jhuang/INTENSO

(empty; data now on ~/DATA_Intenso)

# Name
1 (empty)

~/DATA

# Name
1 Data_Ute_MKL1
2 Data_Ute_RNA_4_2022-11_test
3 Data_Ute_RNA_3
4 Data_Susanne_Carotis_RNASeq_PUBLISHING
5 Data_Jiline_Yersinia_SNP
6 Data_Tam_ABAYE_RS05070_on_A_calcoaceticus_baumannii_complex_DUPLICATED_DEL
7 Data_Nicole_CRC1648
8 Mouse_HS3ST1_12373_out
9 Mouse_HS3ST1_12175_out
10 Data_Biobakery
11 Data_Xiaobo_10x_2
12 Data_Xiaobo_10x_3
13 Talk_Nicole_CRC1648
14 Talks_Bioinformatics_Meeting
15 Talks_resources
16 Data_Susanne_MPox_DAMIAN
17 Data_host_transcriptional_response
18 Talks_including_DEEP-DV
19 DOKTORARBEIT
20 Data_Susanne_MPox
21 Data_Jiline_Transposon
22 Data_Jiline_Transposon2
23 Data_Matlab
24 deepseek-ai
25 Stick_Mi_DEL
26 TODO_shares
27 Data_Ute_RNA_4
28 Data_Liu_PCA_plot
29 README_run_viral-ngs_inside_Docker
30 README_compare_genomes
31 mapped.bam
32 Data_Serpapi
33 Data_Ute_RNA_1_2
34 Data_Marc_RNAseq_2024
35 Data_Nicole_CaptureProbeSequencing
36 LOG_mapping
37 Data_Huang_Human_herpesvirus_3
38 Data_Nicole_DAMIAN_Post-processing_Pathoprobe_FluB_Links
39 Access_to_Win7
40 Data_DAMIAN_Post-processing_Flavivirus_and_FSME_and_Haemophilus
41 Data_Luise_Sepi_STKN
42 Data_Patricia_Sepi_7samples
43 Data_Soeren_2025_PUBLISHING
44 Data_Ben_RNAseq_2025
45 Data_Tam_DNAseq_2025_AYE-WT_Q_S_craA-Tig4_craA-1-Cm200_craA-2-Cm200
46 Data_Patricia_Transposon
47 Data_Patricia_Transposon_2025
48 Colocation_Space
49 Data_Tam_Methylation_2025_empty
50 2025-11-03_eVB-Schreiben_12-57.pdf
51 DEGs_Group1_A1-A3+A8-A10_vs_Group2_B10-B16.png
52 README.pdf
53 Data_Hannes_JCM00612
54 167_redundant_DEL
55 Lehre_Bioinformatik
56 Data_Ben_Boruta_Analysis
57 Data_Childrensclinic_16S_2025_DEL
58 Data_Ben_Mycobacterium_pseudoscrofulaceum
59 Foong_RNA_mSystems_Huang_Changed.txt
60 Data_Pietro_Scatturo_and_Charlotte_Uetrecht_16S_2025
61 Data_JuliaBerger_RNASeq_SARS-CoV-2
62 Data_PaulBongarts_S.epidermidis_HDRNA
63 Data_Ute
64 Data_Foong_DNAseq_2025_AYE_Dark_vs_Light_TODO
65 Data_Foong_RNAseq_2021_ATCC19606_Cm
66 Data_Tam_Funding
67 Data_Tam_RNAseq_2025_LB-AB_IJ_W1_Y1_WT_vs_Mac-AB_IJ_W1_Y1_WT_on_ATCC19606
68 Data_Tam_RNAseq_2025_subMIC_exposure_on_ATCC19606
69 Data_Tam.txt
70 Data_Tam_RNAseq_2024_AUM_MHB_Urine_on_ATCC19606
71 Data_Tam_Metagenomics_2026
72 Data_Michelle
73 Data_Nicole_16S_2025_Childrensclinic
74 Data_Sophie_HDV_Sequences
75 Data_Tam_DNAseq_2026_19606deltaIJfluE
76 README_nf-core
77 Data_Vero_Kymographs
78 Access_to_Win10
79 Data_Patricia_AMRFinderPlus_2025
80 Data_Tam_DNAseq_2025_Unknown-adeABadeIJ_adeIJK_CM1_CM2
81 Data_Damian
82 Data_Karoline_16S
83 Data_JuliaFuchs_RNAseq_2025
84 Data_Tam_DNAseq_2025_ATCC19606-Y1Y2Y3Y4W1W2W3W4_TODO
85 Data_Tam_DNAseq_2026_Acinetobacter_harbinensis
86 Data_Benjamin_DNAseq_2026_GE11174
87 Data_Susanne_spatialRNA_2022.9.1_backup
88 Data_Susanne_spatialRNA

~/DATA_A

# Name
1 Data_Damian_NEW_CREATED
2 Data_R_bubbleplots
3 Data_Ute_TRANSFERED_DEL
4 Paper_Target_capture_sequencing_MHH_PUBLISHED
5 Data_Nicole8_Lamprecht_new_PUBLISHED
6 Data_Samira_RNAseq

~/DATA_B

# Name
1 Data_DAMIAN_endocarditis_encephalitis
2 Data_Denise_sT_PUBLISHING
3 Data_Fran2_16S_func
4 Data_Holger_5179-R1_vs_5179
5 Antraege_
6 Data_16S_Nicole_210222
7 Data_Adam_Influenza_A_virus
8 Data_Anna_Efaecium_assembly
9 Data_Bactopia
10 Data_Ben_RNAseq
11 Data_Johannes_PIV3
12 Data_Luise_Epidome_longitudinal_nose
13 Data_Manja_Hannes_Probedesign
14 Data_Marc_AD_PUBLISHING
15 Data_Marc_RNA-seq_Saureus_Review
16 Data_Nicole_16S
17 Data_Nicole_cfDNA_pathogens
18 Data_Ring_and_CSF_PegivirusC_DAMIAN
19 Data_Song_Microarray
20 Data_Susanne_Omnikron
21 Data_Viro
22 Doktorarbeit
23 Poster_Rohde_20230724
24 Data_Django
25 Data_Holger_S.epidermidis_1585_5179_HD05
26 Data_Manja_RNAseq_Organoids_Virus
27 Data_Holger_MT880870_MT880872_Annotation
28 Data_Soeren_RNA-seq_2022
29 Data_Manja_RNAseq_Organoids_Merged
30 Data_Gunnar_Yersiniomics
31 Data_Manja_RNAseq_Organoids
32 Data_Susanne_Carotis_MS

~/DATA_C

(names only; as listed)

# Name
1 2022-10-27_IRI_manuscript_v03_JH.docx
2 16304905.fasta
3 ’16S data manuscript_NF.docx’
4 180820_2_supp_4265595_sw6zjk.docx
5 180820_2_supp_4265596_sw6zjk.docx
6 1a_vs_3.csv
7 ‘2.05.01.05-A01 Urlaubsantrag-Shuting-beantragt.pdf’
8 2014SawickaBBA.pdf
9 20160509Manuscript_NDM_OXA_mitKomm.doc
10 220607_Agenda_monthly_meeting.pdf
11 ‘20221129 Table mutations.docx’
12 230602_NB501882_0428_AHKG53BGXT.zip
13 362383173.rar
14 562.9459.1.fa
15 562.9459.1_rc.fa
16 ASA3P.pdf
17 All_indels_annotated_vHR.xlsx
18 ‘Amplikon_indeces_Susanne +groups.xlsx’
19 Amplikon_indeces_Susanne.xlsx
20 GAMOLA2
21 Data_Susanne_Carotis_spatialRNA_PUBLISHING (dead link)
22 Data_Paul_Staphylococcus_epidermidis
23 Data_Nicola_Schaltenberg_PICRUSt
24 Data_Nicola_Schaltenberg
25 Data_Nicola_Gagliani
26 Data_methylome_MMc
27 Data_Jingang
28 Data_Indra_RNASeq_GSM2262901
29 Data_Holger_VRE
30 Data_Holger_Pseudomonas_aeruginosa_SNP
31 Data_Hannes_ChIPSeq
32 Data_Emilia_MeDIP
33 Data_ChristophFR_HepE_published
34 Data_Christopher_MeDIP_MMc_published
35 Data_Anna_Kieler_Sepi_Staemme
36 Data_Anna12_HAPDICS_final
37 Data_Anastasia_RNASeq_PUBLISHING
38 Aufnahmeantrag_komplett_10_2022.pdf
39 Astrovirus.pdf
40 COMMANDS
41 Bacterial_pipelines.txt
42 COMPSRA_uke_DEL.jar
43 ChIPSeq_pipeline_desc.docx
44 ChIPSeq_pipeline_desc.pdf
45 Comparative_genomic_analysis_of_eight_novel_haloal.pdf
46 CvO_Klassenliste_7_3.pdf
47 ‘Copy of pool_b1_CGATGT_300.xlsx’
48 Fran_16S_Exp8-17-21-27.txt
49 HPI_DRIVE
50 HEV_aligned.fasta
51 INTENSO_DIR
52 HPI_samples_for_NGS_29.09.22.xlsx
53 Hotmail_to_Gmail
54 Indra_Thesis_161020.pdf
55 ‘LT K331A.gbk’
56 LOG_p954_stat
57 LOG
58 Manuscript_10_02_2021.docx
59 Metagenomics_Tools_and_Insights.pdf
60 ‘Miseq Amplikon LAuf April.xlsx’
61 NGS.tar.gz
62 Nachweis_Bakterien_Viren_im_Hochdurchsatz.pdf
63 Nicole8_Lamprecht_logs
64 Nanopore.handouts.pdf
65 ‘Norovirus paper Susanne 191105.docx’
66 PhyloRNAalifold.pdf
67 README_R
68 README_RNAHiSwitch_DEL
69 RNA-NGS_Analysis_modul3_NanoStringNorm.zip
70 RNAConSLOptV1.2.tar.gz
71 ‘RSV GFP5 including 3`UTR.docx’
72 SNPs_on_pangenome.txt
73 SERVER
74 R_tutorials-master.zip
75 Rawdata_Readme.pdf
76 SUB10826945_record_preview.txt
77 S_staphylococcus_annotated_diff_expr.xls
78 Snakefile_list
79 Source_Classification_Code.rds
80 Supplementary_Table_S3.xlsx
81 Untitled.ipynb
82 UniproUGENE_UserManual.pdf
83 Untitled1.ipynb
84 Untitled2.ipynb
85 Untitled3.ipynb
86 WAC6h_vs_WAP6h_down.txt
87 damian_nodbs
88 WAC6h_vs_WAP6h_up.txt
89 ‘add. Figures Hamburg_UKE.pptx’
90 all_gene_counts_with_annotation.xlsx
91 app_flask.py
92 bengal-bay-0.1.json
93 bengal3_ac3.yml
94 call_shell_from_Ruby.png
95 bengal3ac3.yml
96 empty.fasta
97 coefficients_csaw_vs_diffreps.xlsx
98 exchange.txt
99 exdata-data-NEI_data.zip
100 genes_wac6_wap6.xls
101 go1.13.linux-amd64.tar.gz.1
102 hev_p2-p5.fa
103 map_corrected_backup.txt
104 install_nginx_on_hamm
105 hg19.rmsk.bed
106 metadata-9563675-processed-ok.tsv
107 mkg_sprechstundenflyer_ver1b_dezember_2019.pdf
108 multiqc_config.yaml
109 p11326_OMIKRON3398_corsurv.gb
110 p11326_OMIKRON3398_corsurv.gb_converted.fna
111 parseGenbank_reformat.py
112 pangenome-snakemake-master.zip
113 ‘phylo tree draft.pdf’
114 qiime_params.txt
115 pool_b1_CGATGT_300.zip
116 qiime_params_backup.txt
117 qiime_params_s16_s18.txt
118 snakePipes
119 results_description.html
120 rnaalihishapes.tar.gz
121 rnaseq_length_bias.pdf
122 3932-Leber
123 BioPython
124 Biopython
125 DEEP-DV
126 DOKTORARBEIT
127 Data_16S_Arck_vaginal_stool
128 Data_16S_BS052
129 Data_16S_Birgit
130 Data_16S_Christner
131 Data_16S_Leonie
132 Data_16S_PatientA-G_CSF
133 Data_16S_Schaltenberg
134 Data_16S_benchmark
135 Data_16S_benchmark2
136 Data_16S_gcdh_BKV
137 Data_Alex1_Amplicon
138 Data_Alex1_SNP
139 Data_Analysis_for_Life_Science
140 Data_Anna13_vanA-Element
141 Data_Anna14_PACBIO_methylation
142 Data_Anna_C.acnes2_old_DEL
143 Data_Anna_MT880872_update
144 Data_Anna_gap_filling_agrC
145 Data_Baechlein_Hepacivirus_2018
146 Data_Bornavirus
147 Data_CSF
148 Data_Christine_cz19-178-rothirsch-bovines-hepacivirus
149 Data_Daniela_adenovirus_WGS
150 Data_Emilia_MeDIP_DEL
151 Data_Francesco2021_16S
152 Data_Francesco2021_16S_re
153 Data_Gunnar_MS
154 Data_Hannes_RNASeq
155 Data_Holger_Efaecium_variants_PUBLISHED
156 Data_Holger_VRE_DEL
157 Data_Icebear_Damian
158 Data_Indra3_H3K4_p2_DEL
159 Data_Indra6_RNASeq_ChipSeq_Integration_DEL
160 Data_Indra_Figures
161 Data_KatjaGiersch_new_HDV
162 Data_MHH_Encephalitits_DAMIAN
163 Data_Manja_RPAChIPSeq_public
164 Data_Manuel_WGS_Yersinia
165 Data_Manuel_WGS_Yersinia2_DEL
166 Data_Manuel_WGS_Yersinia_DEL
167 Data_Marcus_tracrRNA_structures
168 Data_Mausmaki_Damian
169 Data_Nicole1_Tropheryma_whipplei
170 Data_Nicole5
171 Data_Nicole5_77-92
172 Data_PaulBecher_Rotavirus
173 Data_Pietschmann_HCV_Amplicon_bigFile
174 Data_Piscine_Orthoreovirus_3_in_Brown_Trout
175 Data_Proteomics
176 Data_RNABioinformatics
177 Data_RNAKinetics
178 Data_R_courses
179 Data_SARS-CoV-2
180 Data_SARS-CoV-2_Genome_Announcement_PUBLISHED
181 Data_Seite
182 Data_Song_aggregate_sum
183 Data_Susanne_Amplicon_RdRp_orf1_2_re
184 Data_Tabea_RNASeq
185 Data_Thaiss1_Microarray_new
186 Data_Tintelnot_16S
187 Data_Wuenee_Plots
188 Data_Yang_Poster
189 Data_jupnote
190 Data_parainfluenza
191 Data_snakemake_recipe
192 Data_temp
193 Data_viGEN
194 Genomic_Data_Science
195 Learn_UGENE
196 MMcPaper
197 Manuscript_Epigenetics_Macrophage_Yersinia
198 Manuscript_RNAHiSwitch
199 MeDIP_Emilia_copy_DEL
200 Method_biopython
201 NGS
202 Okazaki-Seq_Processing
203 RNA-NGS_Analysis_modul3_NanoStringNorm
204 RNAConSLOptV1.2
205 RNAHeliCes
206 RNA_li_HeliCes
207 RNAliHeliCes
208 RNAliHeliCes_Relatedshapes_modified
209 R_refcard
210 R_DataCamp
211 R_cats_package
212 R_tutorials-master
213 SnakeChunks
214 align_4l_on_FJ705359
215 align_4p_on_FJ705359
216 assembly
217 bacto
218 bam2fastq_mapping_again
219 chipster
220 damian_GUI
221 enhancer-snakemake-demo
222 hg19_gene_annotations
223 interlab_comparison_DEL
224 my_flask
225 papers
226 pangenome-snakemake_zhaoc1
227 pyflow-epilogos
228 raw_data_rnaseq_Indra
229 test_raw_data_dnaseq
230 test_raw_data_rnaseq
231 to_Francesco
232 ukepipe
233 ukepipe_nf
234 var_www_DjangoApp_mysite2_2023-05
235 roentgenpass.pdf
236 salmon_tx2gene_GRCh38.tsv
237 salmon_tx2gene_chrHsv1.tsv
238 ‘sample IDs_Lamprecht.xlsx’
239 summarySCC_PM25.rds
240 untitled.py
241 tutorial-rnaseq.pdf
242 x.log
243 webapp.tar.gz
244 temp
245 temp2
246 Data_Susanne_Amplicon_haplotype_analyses_RdRp_orf1_2_re
247 Data_Susanne_WGS_unbiased

~/DATA_D

# Name
1 Data_Soeren_RNA-seq_2023_PUBLISHING
2 Data_Ute
3 Data_Marc_RNA-seq_Sepidermidis
4 Data_Patricia_Transposon
5 Books_DA_for_Life
6 Data_Sven
7 Datasize_calculation_based_on_coverage.txt
8 Data_Paul_HD46_1-wt_resequencing
9 Data_Sanam_DAMIAN
10 Data_Tam_variant_calling
11 Data_Samira_Manuscripts
12 Data_Silvia_VoltRon_Debug
13 Data_Pietschmann_229ECoronavirus_Mutations_2024
14 Data_Pietschmann_229ECoronavirus_Mutations_2025
15 Data_Birthe_Svenja_RSV_Probe3_PUBLISHING

~/DATA_E

# Name
1 j_huang_until_201904
2 Data_2019_April
3 Data_2019_May
4 Data_2019_June
5 Data_2019_July
6 Data_2019_August
7 Data_2019_September
8 Data_Song_RNASeq_PUBLISHED
9 Data_Laura_MP_RNASeq
10 Data_Nicole6_HEV_Swantje2
11 Data_Becher_Damian_Picornavirus_BovHepV
12 bacteria_refseq.zip
13 bacteria_refseq
14 Data_Rotavirus
15 Data_Xiaobo_10x
16 Data_Becher_Damian_Picornavirus_BovHepV_INCOMPLETE_DEL

~/DATA_Intenso

# Name
1 HOME_FREIBURG_DEL
2 150810_M03701_0019_000000000-AFJFK
3 Data_Thaiss2_Microarray
4 VirtualBox_VMs_DEL
5 ‘VirtualBox VMs_DEL’
6 ‘VirtualBox VMs2_DEL’
7 websites
8 DATA
9 Data_Laura
10 Data_Laura_2
11 Data_Laura_3
12 galaxy_tools
13 Downloads2
14 Downloads
15 mom-baby_com_cn
16 ‘VirtualBox VMs2’
17 VirtualBox_VMs
18 CLC_Data
19 Work_Dir2
20 Work_Dir2_SGE
21 Data_SPANDx1_Kpneumoniae_vs_Assembly1
22 MauveOutput
23 Fastqs
24 Data_Anna3_VRE_Ausbruch
25 Work_Dir_mock_broad_mockinput
26 Work_Dir_dM_broad_mockinput
27 Data_Anna8_RNASeq_static_shake_deprecated
28 PENDRIVE_cont
29 Work_Dir_WAP_broad_mockinput
30 Work_Dir_WAC_broad_mockinput
31 Work_Dir_dP_broad_mockinput
32 Data_Nicole10_16S_interlab
33 PAPERS
34 TB
35 Data_Anna4_SNP
36 Data_Carolin1_16S
37 ChipSeq_Raw_Data3_171009_NB501882_0024_AHNGTYBGX3
38 m_aepfelbacher_DEL.zip
39 Data_Anna7_RNASeq_Cytoscape
40 Data_Nicole9_Hund_Katze_Mega
41 Data_Anna2_CO6114
42 Data_Nicole3_TH17_orig
43 Data_Nicole1_Tropheryma_whipplei
44 results_K27
45 ‘VirtualBox VMs’
46 Data_Anna6_RNASeq
47 Data_Anna1_1585_RNAseq
48 Data_Thaiss1_Microarray
49 Data_Nicole7_Anelloviruses_Polyomavirus
50 Data_Nina1_Nicole5_1-76
51 Data_Nina1_merged
52 Data_Nicole8_Lamprecht
53 Data_Anna5_SNP
54 chipseq
55 Downloads_DEL
56 Data_Gagliani2_enriched_16S
57 Data_Gagliani1_18S_16S
58 m_aepfelbacher
59 Data_Susanne_WGS_3amplicons

/media/jhuang/Titisee

# Name
1 Data_Anna4_SNP
2 Data_Anna5_SNP_rsync_error
3 TRASH
4 Data_Nicole6_HEV_4_SNP_calling_PE_DEL
5 Data_Nina1_Nicole7
6 Data_Nicole6_HEV_4_SNP_calling_SE_DEL
7 180119_M03701_0115_000000000-BFG46.zip
8 Data_Nicole10_16S_interlab_PUBLISHED
9 Anna11_assemblies
10 Anna11_trees
11 Data_Nicole6_HEV_new_orig_fastqs
12 Data_Anna9_OXA-48_or_OXA-181
13 bengal_results_v1_2018
14 DO.pdf
15 damian_DEL
16 MAGpy_db
17 UGENE_v1_32_data_cistrome
18 UGENE_v1_32_data_ngs_classification
19 Data_Nicole6_HEV_Swantje
20 Data_Nico_Gagliani
21 GAMOLA2_prototyp
22 Thomas_methylation_EPIC_DO
23 Data_Nicola_Schaltenberg
24 Data_Nicola_Schaltenberg_PICRUSt
25 HOME_FREIBURG
26 Data_Francesco_16S
27 3rd_party
28 ConsPred_prokaryotic_genome_annotation
29 ‘System Volume Information’
30 damian_v201016
31 Data_Holger_VRE
32 Data_Holger_Pseudomonas_aeruginosa_SNP
33 Eigene_Ordner_HR
34 GAMOLA2
35 Data_Anastasia_RNASeq
36 Data_Amir_PUBLISHED
37 ‘$RECYCLE.BIN’
38 Data_Xiaobo_10x_3
39 Data_Tam_DNAseq_2023_Comparative_ATCC19606_AYE_ATCC17978
40 Data_Holger_S.epidermidis_short
41 TEMP
42 Data_Holger_S.epidermidis_long

/media/jhuang/Elements(Denise_ChIPseq)

# Name
1 Data_Denise_LTtrunc_H3K27me3_2_results_DEL
2 Data_Denise_LTtrunc_H3K4me3_2_results_DEL
3 Data_Anna12_HAPDICS_final_not_finished_DEL
4 m_aepfelbacher_DEL
5 Data_Damian
6 ST772_DEL
7 ALL_trimmed_part_DEL
8 Data_Denise_ChIPSeq_Protocol1
9 Data_Pietschmann_HCV_Amplicon
10 Data_Nicole6_HEV_ownMethod_new
11 HD04-1.fasta
12 RNAHiSwitch_
13 RNAHiSwitch__
14 RNAHiSwitch___
15 RNAHiSwitchpaper
16 RNAHiSwitch_milestone1_DELETED
17 RNAHiSwitch_paper.tar.gz
18 RNAHiSwitch_paper_DELETED
19 RNAHiSwitch_milestone1
20 RNAHiSwitch_paper
21 Ute_RNASeq_results
22 Ute_miRNA_results_38
23 RNAHiSwitch
24 Data_HepE_Freiburg_PUBLISHED
25 Data_INTENSO_2022-06
26 ‘$RECYCLE.BIN’
27 ‘System Volume Information’
28 Data_Anna_Mixta_hanseatica_PUBLISHED
29 coi_disclosure.docx
30 Data_Jingang
31 **Data_Susanne_16S_re_UNPUBLISHED ***
32 Data_Denise_ChIPSeq_Protocol2
33 Data_Caroline_RNAseq_wt_timecourse
34 Data_Caroline_RNAseq_brain_organoids
35 Data_Amir_PUBLISHED_DEL
36 Data_download_virus_fam
37 Data_Gunnar_Yersiniomics_COPYFAILED_DEL
38 Data_Paul_and_Marc_Epidome_batch3
39 ifconfig_hamm.txt
40 Data_Soeren_2023_PUBLISHING
41 Data_Birthe_Svenja_RSV_Probe3_PUBLISHING
42 Data_Ute
43 **Data_Susanne_16S_UNPUBLISHED ***

/media/jhuang/Seagate Expansion Drive(HOffice)

# Name
1 SeagateExpansion.ico
2 Autorun.inf
3 Start_Here_Win.exe
4 Warranty.pdf
5 Start_Here_Mac.app
6 Seagate
7 HomeOffice_DIR (Data_Anna_HAPDICS_RNASeq, From_Samsung_T5)
8 DATA_COPY_FROM_178528 (copy_and_clean.sh, logfile_jhuang.log, jhuang)
9 ‘System Volume Information’
10 ‘$RECYCLE.BIN’

/media/jhuang/Elements(Anna_C.arnes)

# Name
1 Data_Swantje_HEV_using_viral-ngs
2 VIPER_static_DEL
3 Data_Nicole6_HEV_Swantje1_blood
4 Data_Nicole6_HEV_benchmark
5 Data_Denise_RNASeq_GSE79958
6 Data_16S_Leonie_from_Nico_Gaglianis
7 Fastqs_19-21
8 ‘System Volume Information’
9 Data_Luise_Epidome_test
10 Data_Anna_C.acnes_PUBLISHED
11 Data_Denise_LT_DNA_Bindung
12 Data_Denise_LT_K331A_RNASeq
13 Data_Luise_Epidome_batch1
14 Data_Luise_Pseudomonas_aeruginosa_PUBLISHED
15 Data_Luise_Epidome_batch2
16 picrust2_out_2024_2
17 ‘$RECYCLE.BIN’

/media/jhuang/Seagate Expansion Drive(DATA_COPY_FROM_hamburg)

# Name
1 Autorun.inf
2 Start_Here_Win.exe
3 Warranty.pdf
4 Start_Here_Mac.app
5 Seagate
6 DATA_COPY_TRANSFER_INCOMPLETE_DEL
7 DATA_COPY_FROM_hamburg

/media/jhuang/Seagate Expansion Drive(Seagate_1)

# Name
1 RNA_seq_analysis_tools_2013
2 Data_Laura0
3 Data_Petra_Arck
4 Data_Martin_mycoplasma
5 chromhmm-enhancers
6 ChromHMM_Dir
7 Data_Denise_sT_H3K4me3
8 Data_Denise_sT_H3K27me3
9 Start_Here_Mac.app
10 Seagate
11 Data_Nicole16_parapoxvirus
12 Project_h_rohde_Susanne_WGS_unbiased_DEL.zip
13 Data_Denise_ChIPSeq_Protocol1
14 Data_ENNGS_pathogen_detection_pipeline_comparison
15 j_huang_201904_202002
16 Data_Laura_ChIPseq_GSE120945
17 batch_200314_incomplete
18 m_aepfelbacher.zip
19 m_error_DEL
20 batch_200325
21 batch_200319
22 GAMOLA2_prototyp
23 Data_Nicola_Gagliani
24 2017-18_raw_data
25 Data_Arck_MeDIP
26 trimmed
27 Data_Nicole_16S_Christmas_2020_2
28 j_huang_202007_202012
29 Data_Nicole_16S_Christmas_2020
30 Downloads_2021-01-18_DEL
31 Data_Laura_plasmid
32 Data_Laura_16S_2_re
33 Data_Laura_16S_2
34 Data_Laura_16S_2re
35 Data_Laura_16S_merged
36 Downloads_DEL
37 Data_Laura_16S
38 Data_Anna12_HAPDICS_final
39 ‘$RECYCLE.BIN’
40 ‘System Volume Information’

/media/jhuang/Seagate Expansion Drive(Seagate_2)

# Name
1 Data_Nicole4_TH17
2 Start_Here_Win.exe
3 Autorun.inf
4 Warranty.pdf
5 Start_Here_Mac.app
6 Seagate
7 Data_Denise_RNASeq_trimmed_DEL
8 HD12
9 Qi_panGenome
10 ALL
11 fastq_HPI_bw_2019_08_and_2020_02
12 f1_R1_link.sh
13 f1_R2_link.sh
14 rtpd_files
15 m_aepfelbacher.zip
16 Data_Nicole_16S_Hamburg_Odense_Cornell_Muenster
17 HyAsP_incomplete_genomes
18 HyAsP_normal_sampled_input
19 HyAsP_complete_genomes
20 video.zip
21 sam2bedgff.pl
22 HD04.infection.hS_vs_HD04.nose.hS_annotated_degenes.xls
23 ALL83
24 Data_Pietschmann_RSV_Probe_PUBLISHED
25 HyAsP_normal
26 Data_Manthey_16S
27 rtpd_files_DEL
28 HyAsP_bold
29 Data_HEV
30 Seq_VRE_hybridassembly
31 Data_Anna12_HAPDICS_raw_data_shovill_prokka
32 Data_Anna_HAPDICS_WGS_ALL
33 Data_HEV_Freiburg_2020
34 Data_Nicole_HDV_Recombination_PUBLISHED
35 s_hero2x
36 201030_M03701_0207_000000000-J57B4.zip
37 README
38 ‘README(1)’
39 dna2.fasta.fai
40 91.pep
41 91.orf
42 91.orf.fai
43 dgaston-dec-06-2012-121211124858-phpapp01.pdf
44 tileshop.fcgi
45 ppat.1009304.s016.tif
46 sequence.txt
47 ‘sequence(1).txt’
48 GSE128169_series_matrix.txt.gz
49 GSE128169_family.soft.gz
50 Data_Anna_HAPDICS_RNASeq
51 Data_Christopher_MeDIP_MMc_PUBLISHED
52 Data_Gunnar_Yersiniomics_IMCOMPLETE_DEL
53 Data_Denise_RNASeq
54 ‘System Volume Information’
55 ‘$RECYCLE.BIN’

/media/jhuang/Elements(An14_RNAs)

# Name
1 Data_Anna10_RP62A
2 Data_Nicole12_16S_Kluwe_Bunders
3 chromhmm-enhancers
4 Data_Denise_sT_Methylation
5 Data_Denise_LTtrunc_Methylation
6 Data_16S_arckNov
7 Data_Tabea_RNASeq
8 nr_gz_README
9 j_huang_raw_fq
10 ‘System Volume Information’
11 ‘$RECYCLE.BIN’
12 host_refs
13 Vraw
14 **Data_Susanne_Amplicon_RdRp_orf1_2 ***
15 tmp
16 Data_RNA188_Paul_Becher
17 Data_ChIPSeq_Laura
18 Data_16S_arckNov_review_PUBLISHED
19 Data_16S_arckNov_re
20 Fastqs
21 Data_Tabea_RNASeq_submission
22 Data_Anna_Cutibacterium_acnes_DEL
23 Data_Silvia_RNASeq_SUBMISSION
24 Data_Hannes_ChIPSeq
25 Data_Anna14_RNASeq_to_be_DEL
26 Data_Pietschmann_RSV_Probe2_PUBLISHED
27 Data_Holger_Klebsiella_pneumoniae_SNP_PUBLISHING
28 Data_Anna14_RNASeq_plus_public

/media/jhuang/Elements(Indra_HAPDICS)

# Name
1 Data_Anna11_Sepdermidis_DEL
2 HD15_without_10
3 HD31
4 HD33
5 HD39
6 HD43
7 HD46
8 HD15_with_10
9 HD26
10 HD59
11 HD25
12 HD21
13 HD17
14 HD04
15 Data_Anna11_Pair1-6_P6
16 Data_Anna12_HAPDICS_HyAsP
17 HAPDICS_hyasp_plasmids
18 Data_Anna_HAPDICS_review
19 data_overview.txt
20 align_assem_res_DEL
21 ‘System Volume Information’
22 EXCHANGE_DEL
23 Data_Indra_H3K4me3_public
24 Data_Gunnar_MS
25 ‘$RECYCLE.BIN’
26 UKE_DELLWorkstation_C_Users_indbe_Desktop
27 Linux_DELLWorkstation_C_Users_indbe_VirtualBoxVMs
28 Data_Anna_HAPDICS_RNASeq_rawdata
29 Data_Indra_H3K27ac_public
30 Data_Holger_Klebsiella_pneumoniae_SNP_PUBLISHING
31 DATA_INDRA_RNASEQ
32 DATA_INDRA_CHIPSEQ

/media/jhuang/Elements(jhuang_*)

# Name
1 ‘Install Western Digital Software for Windows.exe’
2 ‘Install Western Digital Software for Mac.dmg’
3 ‘System Volume Information’
4 ‘$RECYCLE.BIN’
5 20250203_FS10003086_95_BTR67811-0621

/media/jhuang/Smarty

# Name
1 lost+found
2 Blast_db
3 temporary_files_DEL
4 ALIGN_ASSEM
5 Data_Paul_Staphylococcus_epidermidis
6 Data_16S_Degenhardt_Marius_DEL
7 Data_Gunnar_Yersiniomics_DEL
8 Data_Manja_RNAseq_Organoids_Virus
9 Data_Emilia_MeDIP
10 DjangoApp_Backup_2023-10-30
11 ref
12 Data_Michelle_RNAseq_2025_raw_data_DEL_AFTER_UPLOAD_GEO

Original input (as one point)

/media/jhuang/INTENSO is empty --> Now the data are on ~/DATA_Intenso
/dev/sdg1       3,7T  512K  3,7T   1% /media/jhuang/INTENSO

jhuang@WS-2290C:~/DATA$ ls -tlrh
total 1,6M
drwxrwxrwx   6 jhuang jhuang 4,0K Okt 26  2022 Data_Ute_MKL1
drwxrwxrwx   8 jhuang jhuang 4,0K Jan 13  2023 Data_Ute_RNA_4_2022-11_test
drwxrwxr-x   7 jhuang jhuang 4,0K Mär  8  2023 Data_Ute_RNA_3
drwxr-xr-x  11 jhuang jhuang 4,0K Dez 19  2023 Data_Susanne_Carotis_RNASeq_PUBLISHING
drwxr-xr-x  21 jhuang jhuang 4,0K Jun 18  2024 Data_Jiline_Yersinia_SNP
drwxrwxr-x   5 jhuang jhuang 4,0K Jul 22  2024 Data_Tam_ABAYE_RS05070_on_A_calcoaceticus_baumannii_complex_DUPLICATED_DEL
drwxr-xr-x   2 jhuang jhuang 4,0K Jul 23  2024 Data_Nicole_CRC1648
drwxr-xr-x   4 jhuang jhuang 4,0K Sep  6  2024 Mouse_HS3ST1_12373_out
drwxr-xr-x   4 jhuang jhuang 4,0K Sep  6  2024 Mouse_HS3ST1_12175_out
drwxrwxr-x  10 jhuang jhuang 4,0K Sep 12  2024 Data_Biobakery
drwxrwxr-x   6 jhuang jhuang 4,0K Sep 23  2024 Data_Xiaobo_10x_2
drwxr-xr-x   4 jhuang jhuang 4,0K Sep 23  2024 Data_Xiaobo_10x_3
drwxr-xr-x   3 jhuang jhuang 4,0K Sep 26  2024 Talk_Nicole_CRC1648
drwxr-xr-x   2 jhuang jhuang 4,0K Sep 26  2024 Talks_Bioinformatics_Meeting
drwxr-xr-x   2 jhuang jhuang  12K Sep 26  2024 Talks_resources
drwxrwxr-x   6 jhuang jhuang  12K Okt 10  2024 Data_Susanne_MPox_DAMIAN
drwxrwxr-x   3 jhuang jhuang 4,0K Okt 14  2024 Data_host_transcriptional_response
drwxr-xr-x  13 jhuang jhuang 4,0K Okt 23  2024 Talks_including_DEEP-DV
drwxrwxr-x   2 jhuang jhuang 4,0K Okt 24  2024 DOKTORARBEIT
drwxrwxr-x  18 jhuang jhuang 4,0K Nov 11  2024 Data_Susanne_MPox
drwxrwxr-x  25 jhuang jhuang  12K Nov 11  2024 Data_Jiline_Transposon
drwxrwxr-x  16 jhuang jhuang  20K Nov 25  2024 Data_Jiline_Transposon2
drwxrwxr-x   3 jhuang jhuang 4,0K Dez 13  2024 Data_Matlab
drwxrwxr-x   5 jhuang jhuang 4,0K Jan 28  2025 deepseek-ai
drwx------   4 jhuang jhuang 4,0K Feb  5  2025 Stick_Mi_DEL
-rw-rw-r--   1 jhuang jhuang 1,1K Feb 18  2025 TODO_shares
drwxrwxrwx  13 jhuang jhuang 4,0K Mär  3  2025 Data_Ute_RNA_4
drwxrwxr-x   2 jhuang jhuang 4,0K Mär 31  2025 Data_Liu_PCA_plot
-rw-rw-r--   1 jhuang jhuang  43K Apr  3  2025 README_run_viral-ngs_inside_Docker
-rw-rw-r--   1 jhuang jhuang 8,7K Apr  9  2025 README_compare_genomes
-rw-rw-r--   1 jhuang jhuang    0 Apr 11  2025 mapped.bam
drwxrwxr-x   3 jhuang jhuang 4,0K Apr 24  2025 Data_Serpapi
drwxrwxrwx  22 jhuang jhuang 4,0K Apr 30  2025 Data_Ute_RNA_1_2
drwxrwxr-x  15 jhuang jhuang 4,0K Apr 30  2025 Data_Marc_RNAseq_2024
drwxrwxr-x  45 jhuang jhuang  12K Mai 15  2025 Data_Nicole_CaptureProbeSequencing
-rw-rw-r--   1 jhuang jhuang  657 Mai 23  2025 LOG_mapping
drwxrwxr-x  46 jhuang jhuang 4,0K Mai 26  2025 Data_Huang_Human_herpesvirus_3
drwxrwxr-x   8 jhuang jhuang 4,0K Jun 13  2025 Data_Nicole_DAMIAN_Post-processing_Pathoprobe_FluB_Links
lrwxrwxrwx   1 jhuang jhuang   37 Jun 16  2025 Access_to_Win7 -> ./Data_Marius_16S/picrust2_out_2024_2
drwxrwxr-x  17 jhuang jhuang 4,0K Jun 18  2025 Data_DAMIAN_Post-processing_Flavivirus_and_FSME_and_Haemophilus
drwxr-xr-x  42 jhuang jhuang  36K Jun 23  2025 Data_Luise_Sepi_STKN
drwxrwxr-x  29 jhuang jhuang  20K Jul 22  2025 Data_Patricia_Sepi_7samples
drwxr-xr-x   9 jhuang jhuang 4,0K Aug  8  2025 Data_Soeren_2025_PUBLISHING
drwxrwxr-x   9 jhuang jhuang 4,0K Aug 13  2025 Data_Ben_RNAseq_2025
drwxrwxr-x  34 jhuang jhuang  12K Sep  3 12:18 Data_Tam_DNAseq_2025_AYE-WT_Q_S_craA-Tig4_craA-1-Cm200_craA-2-Cm200
drwxrwxr-x  50 jhuang jhuang  16K Okt  6 17:59 Data_Patricia_Transposon
drwxrwxr-x  23 jhuang jhuang  12K Okt 20 13:27 Data_Patricia_Transposon_2025
drwxrwxr-x   2 jhuang jhuang 4,0K Okt 23 12:21 Colocation_Space
drwxrwxr-x   2 jhuang jhuang 4,0K Okt 27 12:56 Data_Tam_Methylation_2025_empty
-rw-rw-r--   1 jhuang jhuang 151K Nov  3 13:01 2025-11-03_eVB-Schreiben_12-57.pdf
-rw-rw-r--   1 jhuang jhuang  67K Nov  5 16:59 DEGs_Group1_A1-A3+A8-A10_vs_Group2_B10-B16.png
-rw-rw-r--   1 jhuang jhuang 687K Nov 14 09:55 README.pdf
drwxrwxr-x   2 jhuang jhuang 4,0K Nov 24 15:43 Data_Hannes_JCM00612
drwxrwxr-x   3 jhuang jhuang 4,0K Dez  4 17:03 167_redundant_DEL
drwxrwxr-x   2 jhuang jhuang 4,0K Dez  8 10:33 Lehre_Bioinformatik
drwxrwxr-x  27 jhuang jhuang  12K Dez  8 11:29 Data_Ben_Boruta_Analysis
drwxrwxr-x  18 jhuang jhuang 4,0K Dez  8 17:39 Data_Childrensclinic_16S_2025_DEL
drwxrwxr-x   2 jhuang jhuang 4,0K Dez 10 10:05 Data_Ben_Mycobacterium_pseudoscrofulaceum
-rw-rw-r--   1 jhuang jhuang 8,9K Dez 15 12:42 Foong_RNA_mSystems_Huang_Changed.txt
drwxrwxr-x  22 jhuang jhuang 4,0K Dez 17 13:07 Data_Pietro_Scatturo_and_Charlotte_Uetrecht_16S_2025
drwxrwxr-x   8 jhuang jhuang 4,0K Dez 18 10:45 Data_JuliaBerger_RNASeq_SARS-CoV-2
drwxrwxr-x  19 jhuang jhuang 4,0K Jan  3 17:42 Data_PaulBongarts_S.epidermidis_HDRNA
lrwxrwxrwx   1 jhuang jhuang   31 Jan 12 14:30 Data_Ute -> /media/jhuang/Elements/Data_Ute
drwxrwxr-x  12 jhuang jhuang 4,0K Jan 16 12:44 Data_Foong_DNAseq_2025_AYE_Dark_vs_Light_TODO
drwxrwxrwx  22 jhuang jhuang 4,0K Jan 16 12:48 Data_Foong_RNAseq_2021_ATCC19606_Cm
drwxrwxr-x   2 jhuang jhuang 4,0K Jan 16 13:02 Data_Tam_Funding
drwxrwxr-x   9 jhuang jhuang 4,0K Jan 16 13:32 Data_Tam_RNAseq_2025_LB-AB_IJ_W1_Y1_WT_vs_Mac-AB_IJ_W1_Y1_WT_on_ATCC19606
drwxrwxr-x  12 jhuang jhuang 4,0K Jan 16 13:32 Data_Tam_RNAseq_2025_subMIC_exposure_on_ATCC19606
-rw-rw-r--   1 jhuang jhuang 1,2K Jan 16 13:34 Data_Tam.txt
drwxrwxr-x  16 jhuang jhuang 4,0K Jan 16 13:37 Data_Tam_RNAseq_2024_AUM_MHB_Urine_on_ATCC19606
drwxrwxr-x  10 jhuang jhuang 4,0K Jan 16 18:22 Data_Tam_Metagenomics_2026
drwxrwxr-x   6 jhuang jhuang  16K Jan 23 16:35 Data_Michelle
drwxrwxr-x  38 jhuang jhuang  12K Jan 28 15:20 Data_Nicole_16S_2025_Childrensclinic
drwxr-xr-x 145 jhuang jhuang  36K Jan 29 10:49 Data_Sophie_HDV_Sequences
drwxrwxr-x   4 jhuang jhuang 4,0K Jan 30 11:44 Data_Tam_DNAseq_2026_19606deltaIJfluE
-rw-rw-r--   1 jhuang jhuang  63K Jan 30 17:53 README_nf-core
drwxrwxr-x  22 jhuang jhuang 4,0K Feb  4 10:43 Data_Vero_Kymographs
drwxrwxr-x  13 jhuang jhuang 4,0K Feb  4 14:06 Access_to_Win10
drwxrwxr-x   7 jhuang jhuang 4,0K Feb  5 11:59 Data_Patricia_AMRFinderPlus_2025
drwxrwxr-x  45 jhuang jhuang 4,0K Feb  6 11:54 Data_Tam_DNAseq_2025_Unknown-adeABadeIJ_adeIJK_CM1_CM2
drwxrwxr-x  41 jhuang jhuang  12K Feb  9 15:11 Data_Damian
drwxrwxr-x   6 jhuang jhuang 4,0K Feb 13 12:48 Data_Karoline_16S
drwxrwxr-x  13 jhuang jhuang  12K Feb 13 18:09 Data_JuliaFuchs_RNAseq_2025
drwxrwxr-x  18 jhuang jhuang 4,0K Feb 16 11:19 Data_Tam_DNAseq_2025_ATCC19606-Y1Y2Y3Y4W1W2W3W4_TODO
drwxrwxr-x  34 jhuang jhuang 4,0K Feb 16 15:54 Data_Tam_DNAseq_2026_Acinetobacter_harbinensis
drwxrwxr-x  19 jhuang jhuang 4,0K Feb 16 17:13 Data_Benjamin_DNAseq_2026_GE11174
drwxrwxrwx  36 jhuang jhuang  12K Feb 17 15:02 Data_Susanne_spatialRNA_2022.9.1_backup
drwxrwxr-x  39 jhuang jhuang  12K Feb 17 15:12 Data_Susanne_spatialRNA

jhuang@WS-2290C:~/DATA_A$ ls -ltrh
total 24K
drwxr-xr-x  7 jhuang jhuang 4,0K Jun 18  2024 Data_Damian_NEW_CREATED
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024 Data_R_bubbleplots
drwxr-xr-x 16 jhuang jhuang 4,0K Jun 18  2024 Data_Ute_TRANSFERED_DEL
drwxr-xr-x  2 jhuang jhuang 4,0K Okt  7  2024 Paper_Target_capture_sequencing_MHH_PUBLISHED
drwxr-xr-x 20 jhuang jhuang 4,0K Okt  8  2024 Data_Nicole8_Lamprecht_new_PUBLISHED
drwxrwxrwx  8 jhuang jhuang 4,0K Mai 21  2025 Data_Samira_RNAseq

jhuang@WS-2290C:~/DATA_B$ ls -tlrh
total 136K
drwxr-xr-x  3 jhuang jhuang 4,0K Jun 18  2024 Data_DAMIAN_endocarditis_encephalitis
drwxr-xr-x  8 jhuang jhuang 4,0K Jun 18  2024 Data_Denise_sT_PUBLISHING
drwxr-xr-x 12 jhuang jhuang 4,0K Jun 18  2024 Data_Fran2_16S_func
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024 Data_Holger_5179-R1_vs_5179
drwxr-xr-x 16 jhuang jhuang 4,0K Jun 18  2024 Antraege_
drwxr-xr-x 18 jhuang jhuang 4,0K Jun 18  2024 Data_16S_Nicole_210222
drwxr-xr-x  6 jhuang jhuang 4,0K Jun 18  2024 Data_Adam_Influenza_A_virus
drwxr-xr-x 14 jhuang jhuang  12K Jun 18  2024 Data_Anna_Efaecium_assembly
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024 Data_Bactopia
drwxr-xr-x  5 jhuang jhuang 4,0K Jun 18  2024 Data_Ben_RNAseq
drwxr-xr-x  7 jhuang jhuang 4,0K Jun 18  2024 Data_Johannes_PIV3
drwxr-xr-x 19 jhuang jhuang 4,0K Jun 18  2024 Data_Luise_Epidome_longitudinal_nose
drwxr-xr-x  6 jhuang jhuang 4,0K Jun 18  2024 Data_Manja_Hannes_Probedesign
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024 Data_Marc_AD_PUBLISHING
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024 Data_Marc_RNA-seq_Saureus_Review
drwxr-xr-x 17 jhuang jhuang 4,0K Jun 18  2024 Data_Nicole_16S
drwxr-xr-x  3 jhuang jhuang 4,0K Jun 18  2024 Data_Nicole_cfDNA_pathogens
drwxr-xr-x 16 jhuang jhuang 4,0K Jun 18  2024 Data_Ring_and_CSF_PegivirusC_DAMIAN
drwxr-xr-x  4 jhuang jhuang 4,0K Jun 18  2024 Data_Song_Microarray
drwxr-xr-x 11 jhuang jhuang 4,0K Jun 18  2024 Data_Susanne_Omnikron
drwxr-xr-x  3 jhuang jhuang 4,0K Jun 18  2024 Data_Viro
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024 Doktorarbeit
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024 Poster_Rohde_20230724
drwxr-xr-x  6 jhuang jhuang 4,0K Jul 12  2024 Data_Django
drwxr-xr-x 35 jhuang jhuang 4,0K Okt 21  2024 Data_Holger_S.epidermidis_1585_5179_HD05
drwxr-xr-x  9 jhuang jhuang 4,0K Nov 18  2024 Data_Manja_RNAseq_Organoids_Virus
drwxr-xr-x  2 jhuang jhuang 4,0K Feb 21  2025 Data_Holger_MT880870_MT880872_Annotation
drwxr-xr-x 12 jhuang jhuang 4,0K Apr  8  2025 Data_Soeren_RNA-seq_2022
drwxr-xr-x  5 jhuang jhuang 4,0K Apr 11  2025 Data_Manja_RNAseq_Organoids_Merged
drwxr-xr-x 24 jhuang jhuang 4,0K Apr 25  2025 Data_Gunnar_Yersiniomics
drwxr-xr-x 10 jhuang jhuang 4,0K Jan 16 17:14 Data_Manja_RNAseq_Organoids
drwxr-xr-x  3 jhuang jhuang 4,0K Feb 17 12:11 Data_Susanne_Carotis_MS

jhuang@WS-2290C:~/DATA_C$ ls -tlrh
total 13G
-rwxr-xr-x  1 jhuang jhuang 1,7M Jun 18  2024  2022-10-27_IRI_manuscript_v03_JH.docx
-rwxr-xr-x  1 jhuang jhuang 7,1K Jun 18  2024  16304905.fasta
-rwxr-xr-x  1 jhuang jhuang  55K Jun 18  2024 '16S data manuscript_NF.docx'
-rwxr-xr-x  1 jhuang jhuang 792K Jun 18  2024  180820_2_supp_4265595_sw6zjk.docx
-rwxr-xr-x  1 jhuang jhuang  17K Jun 18  2024  180820_2_supp_4265596_sw6zjk.docx
-rwxr-xr-x  1 jhuang jhuang  12K Jun 18  2024  1a_vs_3.csv
-rwxr-xr-x  1 jhuang jhuang  90K Jun 18  2024 '2.05.01.05-A01 Urlaubsantrag-Shuting-beantragt.pdf'
-rwxr-xr-x  1 jhuang jhuang 708K Jun 18  2024  2014SawickaBBA.pdf
-rwxr-xr-x  1 jhuang jhuang  61K Jun 18  2024  20160509Manuscript_NDM_OXA_mitKomm.doc
-rwxr-xr-x  1 jhuang jhuang 289K Jun 18  2024  220607_Agenda_monthly_meeting.pdf
-rwxr-xr-x  1 jhuang jhuang  14K Jun 18  2024 '20221129 Table mutations.docx'
-rwxr-xr-x  1 jhuang jhuang  12G Jun 18  2024  230602_NB501882_0428_AHKG53BGXT.zip
-rwxr-xr-x  1 jhuang jhuang 107K Jun 18  2024  362383173.rar
-rwxr-xr-x  1 jhuang jhuang 128K Jun 18  2024  562.9459.1.fa
-rwxr-xr-x  1 jhuang jhuang 126K Jun 18  2024  562.9459.1_rc.fa
-rwxr-xr-x  1 jhuang jhuang 1,6M Jun 18  2024  ASA3P.pdf
-rwxr-xr-x  1 jhuang jhuang  21K Jun 18  2024  All_indels_annotated_vHR.xlsx
-rwxr-xr-x  1 jhuang jhuang  11K Jun 18  2024 'Amplikon_indeces_Susanne +groups.xlsx'
-rwxr-xr-x  1 jhuang jhuang 9,6K Jun 18  2024  Amplikon_indeces_Susanne.xlsx
-rwxr-xr-x  1 jhuang jhuang   68 Jun 18  2024  GAMOLA2
-rwxr-xr-x  1 jhuang jhuang   88 Jun 18  2024  Data_Susanne_Carotis_spatialRNA_PUBLISHING
-rwxr-xr-x  1 jhuang jhuang  112 Jun 18  2024  Data_Paul_Staphylococcus_epidermidis
-rwxr-xr-x  1 jhuang jhuang  118 Jun 18  2024  Data_Nicola_Schaltenberg_PICRUSt
-rwxr-xr-x  1 jhuang jhuang  100 Jun 18  2024  Data_Nicola_Schaltenberg
-rwxr-xr-x  1 jhuang jhuang   94 Jun 18  2024  Data_Nicola_Gagliani
-rwxr-xr-x  1 jhuang jhuang   96 Jun 18  2024  Data_methylome_MMc
-rwxr-xr-x  1 jhuang jhuang   78 Jun 18  2024  Data_Jingang
-rwxr-xr-x  1 jhuang jhuang  112 Jun 18  2024  Data_Indra_RNASeq_GSM2262901
-rwxr-xr-x  1 jhuang jhuang   84 Jun 18  2024  Data_Holger_VRE
-rwxr-xr-x  1 jhuang jhuang  128 Jun 18  2024  Data_Holger_Pseudomonas_aeruginosa_SNP
-rwxr-xr-x  1 jhuang jhuang   92 Jun 18  2024  Data_Hannes_ChIPSeq
-rwxr-xr-x  1 jhuang jhuang   76 Jun 18  2024  Data_Emilia_MeDIP
-rwxr-xr-x  1 jhuang jhuang   88 Jun 18  2024  Data_ChristophFR_HepE_published
-rwxr-xr-x  1 jhuang jhuang  158 Jun 18  2024  Data_Christopher_MeDIP_MMc_published
-rwxr-xr-x  1 jhuang jhuang  104 Jun 18  2024  Data_Anna_Kieler_Sepi_Staemme
-rwxr-xr-x  1 jhuang jhuang  136 Jun 18  2024  Data_Anna12_HAPDICS_final
-rwxr-xr-x  1 jhuang jhuang   96 Jun 18  2024  Data_Anastasia_RNASeq_PUBLISHING
-rwxr-xr-x  1 jhuang jhuang 169K Jun 18  2024  Aufnahmeantrag_komplett_10_2022.pdf
-rwxr-xr-x  1 jhuang jhuang 1,2M Jun 18  2024  Astrovirus.pdf
-rwxr-xr-x  1 jhuang jhuang  732 Jun 18  2024  COMMANDS
-rwxr-xr-x  1 jhuang jhuang  690 Jun 18  2024  Bacterial_pipelines.txt
-rwxr-xr-x  1 jhuang jhuang  16M Jun 18  2024  COMPSRA_uke_DEL.jar
-rwxr-xr-x  1 jhuang jhuang 239K Jun 18  2024  ChIPSeq_pipeline_desc.docx
-rwxr-xr-x  1 jhuang jhuang 385K Jun 18  2024  ChIPSeq_pipeline_desc.pdf
-rwxr-xr-x  1 jhuang jhuang 2,1M Jun 18  2024  Comparative_genomic_analysis_of_eight_novel_haloal.pdf
-rwxr-xr-x  1 jhuang jhuang  64K Jun 18  2024  CvO_Klassenliste_7_3.pdf
-rwxr-xr-x  1 jhuang jhuang 649K Jun 18  2024 'Copy of pool_b1_CGATGT_300.xlsx'
-rwxr-xr-x  1 jhuang jhuang 3,9K Jun 18  2024  Fran_16S_Exp8-17-21-27.txt
-rwxr-xr-x  1 jhuang jhuang  463 Jun 18  2024  HPI_DRIVE
-rwxr-xr-x  1 jhuang jhuang 179K Jun 18  2024  HEV_aligned.fasta
-rwxr-xr-x  1 jhuang jhuang 4,1K Jun 18  2024  INTENSO_DIR
-rwxr-xr-x  1 jhuang jhuang  14K Jun 18  2024  HPI_samples_for_NGS_29.09.22.xlsx
-rwxr-xr-x  1 jhuang jhuang 4,3K Jun 18  2024  Hotmail_to_Gmail
-rwxr-xr-x  1 jhuang jhuang  13M Jun 18  2024  Indra_Thesis_161020.pdf
-rwxr-xr-x  1 jhuang jhuang 5,2K Jun 18  2024 'LT K331A.gbk'
-rwxr-xr-x  1 jhuang jhuang    0 Jun 18  2024  LOG_p954_stat
-rwxr-xr-x  1 jhuang jhuang 684K Jun 18  2024  LOG
-rwxr-xr-x  1 jhuang jhuang 197K Jun 18  2024  Manuscript_10_02_2021.docx
-rwxr-xr-x  1 jhuang jhuang 595K Jun 18  2024  Metagenomics_Tools_and_Insights.pdf
-rwxr-xr-x  1 jhuang jhuang  14K Jun 18  2024 'Miseq Amplikon LAuf April.xlsx'
-rwxr-xr-x  1 jhuang jhuang 2,2M Jun 18  2024  NGS.tar.gz
-rwxr-xr-x  1 jhuang jhuang 586K Jun 18  2024  Nachweis_Bakterien_Viren_im_Hochdurchsatz.pdf
-rwxr-xr-x  1 jhuang jhuang 1,2K Jun 18  2024  Nicole8_Lamprecht_logs
-rwxr-xr-x  1 jhuang jhuang  24M Jun 18  2024  Nanopore.handouts.pdf
-rwxr-xr-x  1 jhuang jhuang 113K Jun 18  2024 'Norovirus paper Susanne 191105.docx'
-rwxr-xr-x  1 jhuang jhuang 503K Jun 18  2024  PhyloRNAalifold.pdf
-rwxr-xr-x  1 jhuang jhuang  19K Jun 18  2024  README_R
-rwxr-xr-x  1 jhuang jhuang 137K Jun 18  2024  README_RNAHiSwitch_DEL
-rwxr-xr-x  1 jhuang jhuang 8,3M Jun 18  2024  RNA-NGS_Analysis_modul3_NanoStringNorm.zip
-rwxr-xr-x  1 jhuang jhuang  57K Jun 18  2024  RNAConSLOptV1.2.tar.gz
-rwxr-xr-x  1 jhuang jhuang  17K Jun 18  2024 'RSV GFP5 including 3`UTR.docx'
-rwxr-xr-x  1 jhuang jhuang  238 Jun 18  2024  SNPs_on_pangenome.txt
-rwxr-xr-x  1 jhuang jhuang   55 Jun 18  2024  SERVER
-rwxr-xr-x  1 jhuang jhuang  26M Jun 18  2024  R_tutorials-master.zip
-rwxr-xr-x  1 jhuang jhuang 182K Jun 18  2024  Rawdata_Readme.pdf
-rwxr-xr-x  1 jhuang jhuang  40K Jun 18  2024  SUB10826945_record_preview.txt
-rwxr-xr-x  1 jhuang jhuang 283K Jun 18  2024  S_staphylococcus_annotated_diff_expr.xls
-rwxr-xr-x  1 jhuang jhuang 2,0K Jun 18  2024  Snakefile_list
-rwxr-xr-x  1 jhuang jhuang 160K Jun 18  2024  Source_Classification_Code.rds
-rwxr-xr-x  1 jhuang jhuang  61K Jun 18  2024  Supplementary_Table_S3.xlsx
-rwxr-xr-x  1 jhuang jhuang  617 Jun 18  2024  Untitled.ipynb
-rwxr-xr-x  1 jhuang jhuang 127M Jun 18  2024  UniproUGENE_UserManual.pdf
-rwxr-xr-x  1 jhuang jhuang  14M Jun 18  2024  Untitled1.ipynb
-rwxr-xr-x  1 jhuang jhuang 110K Jun 18  2024  Untitled2.ipynb
-rwxr-xr-x  1 jhuang jhuang 2,9K Jun 18  2024  Untitled3.ipynb
-rwxr-xr-x  1 jhuang jhuang  18K Jun 18  2024  WAC6h_vs_WAP6h_down.txt
-rwxr-xr-x  1 jhuang jhuang  100 Jun 18  2024  damian_nodbs
-rwxr-xr-x  1 jhuang jhuang  45K Jun 18  2024  WAC6h_vs_WAP6h_up.txt
-rwxr-xr-x  1 jhuang jhuang 635K Jun 18  2024 'add. Figures Hamburg_UKE.pptx'
-rwxr-xr-x  1 jhuang jhuang 3,7M Jun 18  2024  all_gene_counts_with_annotation.xlsx
-rwxr-xr-x  1 jhuang jhuang  22K Jun 18  2024  app_flask.py
-rwxr-xr-x  1 jhuang jhuang 1,8K Jun 18  2024  bengal-bay-0.1.json
-rwxr-xr-x  1 jhuang jhuang  16K Jun 18  2024  bengal3_ac3.yml
-rwxr-xr-x  1 jhuang jhuang 246K Jun 18  2024  call_shell_from_Ruby.png
-rwxr-xr-x  1 jhuang jhuang 8,1K Jun 18  2024  bengal3_ac3_.yml
-rwxr-xr-x  1 jhuang jhuang   12 Jun 18  2024  empty.fasta
-rwxr-xr-x  1 jhuang jhuang  32K Jun 18  2024  coefficients_csaw_vs_diffreps.xlsx
-rwxr-xr-x  1 jhuang jhuang 4,3K Jun 18  2024  exchange.txt
-rwxr-xr-x  1 jhuang jhuang  30M Jun 18  2024  exdata-data-NEI_data.zip
-rwxr-xr-x  1 jhuang jhuang 6,6K Jun 18  2024  genes_wac6_wap6.xls
-rwxr-xr-x  1 jhuang jhuang 115M Jun 18  2024  go1.13.linux-amd64.tar.gz.1
-rwxr-xr-x  1 jhuang jhuang  29K Jun 18  2024  hev_p2-p5.fa
-rwxr-xr-x  1 jhuang jhuang 3,8K Jun 18  2024  map_corrected_backup.txt
-rwxr-xr-x  1 jhuang jhuang  325 Jun 18  2024  install_nginx_on_hamm
-rwxr-xr-x  1 jhuang jhuang  20M Jun 18  2024  hg19.rmsk.bed
-rwxr-xr-x  1 jhuang jhuang 107K Jun 18  2024  metadata-9563675-processed-ok.tsv
-rwxr-xr-x  1 jhuang jhuang 288K Jun 18  2024  mkg_sprechstundenflyer_ver1b_dezember_2019.pdf
-rwxr-xr-x  1 jhuang jhuang  588 Jun 18  2024  multiqc_config.yaml
-rwxr-xr-x  1 jhuang jhuang  38K Jun 18  2024  p11326_OMIKRON3398_corsurv.gb
-rwxr-xr-x  1 jhuang jhuang  30K Jun 18  2024  p11326_OMIKRON3398_corsurv.gb_converted.fna
-rwxr-xr-x  1 jhuang jhuang 3,9K Jun 18  2024  parseGenbank_reformat.py
-rwxr-xr-x  1 jhuang jhuang 222K Jun 18  2024  pangenome-snakemake-master.zip
-rwxr-xr-x  1 jhuang jhuang 283K Jun 18  2024 'phylo tree draft.pdf'
-rwxr-xr-x  1 jhuang jhuang  125 Jun 18  2024  qiime_params.txt
-rwxr-xr-x  1 jhuang jhuang 2,3M Jun 18  2024  pool_b1_CGATGT_300.zip
-rwxr-xr-x  1 jhuang jhuang 5,5K Jun 18  2024  qiime_params_backup.txt
-rwxr-xr-x  1 jhuang jhuang 4,5K Jun 18  2024  qiime_params_s16_s18.txt
-rwxr-xr-x  1 jhuang jhuang   68 Jun 18  2024  snakePipes
-rwxr-xr-x  1 jhuang jhuang  25K Jun 18  2024  results_description.html
-rwxr-xr-x  1 jhuang jhuang 139M Jun 18  2024  rnaalihishapes.tar.gz
-rwxr-xr-x  1 jhuang jhuang 3,4M Jun 18  2024  rnaseq_length_bias.pdf
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024  3932-Leber
drwxr-xr-x  6 jhuang jhuang 4,0K Jun 18  2024  BioPython
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024  Biopython
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024  DEEP-DV
drwxr-xr-x 13 jhuang jhuang 4,0K Jun 18  2024  DOKTORARBEIT
drwxr-xr-x 17 jhuang jhuang 4,0K Jun 18  2024  Data_16S_Arck_vaginal_stool
drwxr-xr-x 22 jhuang jhuang 4,0K Jun 18  2024  Data_16S_BS052
drwxr-xr-x 13 jhuang jhuang 4,0K Jun 18  2024  Data_16S_Birgit
drwxr-xr-x  3 jhuang jhuang 4,0K Jun 18  2024  Data_16S_Christner
drwxr-xr-x  9 jhuang jhuang 4,0K Jun 18  2024  Data_16S_Leonie
drwxr-xr-x 11 jhuang jhuang 4,0K Jun 18  2024  Data_16S_PatientA-G_CSF
drwxr-xr-x 14 jhuang jhuang 4,0K Jun 18  2024  Data_16S_Schaltenberg
drwxr-xr-x  7 jhuang jhuang 4,0K Jun 18  2024  Data_16S_benchmark
drwxr-xr-x  7 jhuang jhuang 4,0K Jun 18  2024  Data_16S_benchmark2
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024  Data_16S_gcdh_BKV
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024  Data_Alex1_Amplicon
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024  Data_Alex1_SNP
drwxr-xr-x  5 jhuang jhuang 4,0K Jun 18  2024  Data_Analysis_for_Life_Science
drwxr-xr-x 19 jhuang jhuang 4,0K Jun 18  2024  Data_Anna13_vanA-Element
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024  Data_Anna14_PACBIO_methylation
drwxr-xr-x  8 jhuang jhuang 4,0K Jun 18  2024  Data_Anna_C.acnes2_old_DEL
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024  Data_Anna_MT880872_update
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024  Data_Anna_gap_filling_agrC
drwxr-xr-x  4 jhuang jhuang 4,0K Jun 18  2024  Data_Baechlein_Hepacivirus_2018
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024  Data_Bornavirus
drwxr-xr-x  3 jhuang jhuang 4,0K Jun 18  2024  Data_CSF
drwxr-xr-x  9 jhuang jhuang 4,0K Jun 18  2024  Data_Christine_cz19-178-rothirsch-bovines-hepacivirus
drwxr-xr-x  4 jhuang jhuang 4,0K Jun 18  2024  Data_Daniela_adenovirus_WGS
drwxr-xr-x  3 jhuang jhuang 4,0K Jun 18  2024  Data_Emilia_MeDIP_DEL
drwxr-xr-x 14 jhuang jhuang 4,0K Jun 18  2024  Data_Francesco2021_16S
drwxr-xr-x  9 jhuang jhuang 4,0K Jun 18  2024  Data_Francesco2021_16S_re
drwxr-xr-x  3 jhuang jhuang 4,0K Jun 18  2024  Data_Gunnar_MS
drwxr-xr-x 10 jhuang jhuang 4,0K Jun 18  2024  Data_Hannes_RNASeq
drwxr-xr-x 29 jhuang jhuang 4,0K Jun 18  2024  Data_Holger_Efaecium_variants_PUBLISHED
drwxr-xr-x  5 jhuang jhuang 4,0K Jun 18  2024  Data_Holger_VRE_DEL
drwxr-xr-x  3 jhuang jhuang 4,0K Jun 18  2024  Data_Icebear_Damian
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024  Data_Indra3_H3K4_p2_DEL
drwxr-xr-x  4 jhuang jhuang 4,0K Jun 18  2024  Data_Indra6_RNASeq_ChipSeq_Integration_DEL
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024  Data_Indra_Figures
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024  Data_KatjaGiersch_new_HDV
drwxr-xr-x  3 jhuang jhuang 4,0K Jun 18  2024  Data_MHH_Encephalitits_DAMIAN
drwxr-xr-x  6 jhuang jhuang 4,0K Jun 18  2024  Data_Manja_RPAChIPSeq_public
drwxr-xr-x 72 jhuang jhuang  12K Jun 18  2024  Data_Manuel_WGS_Yersinia
drwxr-xr-x 32 jhuang jhuang 4,0K Jun 18  2024  Data_Manuel_WGS_Yersinia2_DEL
drwxr-xr-x  4 jhuang jhuang 4,0K Jun 18  2024  Data_Manuel_WGS_Yersinia_DEL
drwxr-xr-x 13 jhuang jhuang 4,0K Jun 18  2024  Data_Marcus_tracrRNA_structures
drwxr-xr-x  5 jhuang jhuang 4,0K Jun 18  2024  Data_Mausmaki_Damian
drwxr-xr-x  4 jhuang jhuang 4,0K Jun 18  2024  Data_Nicole1_Tropheryma_whipplei
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024  Data_Nicole5
drwxr-xr-x  6 jhuang jhuang 4,0K Jun 18  2024  Data_Nicole5_77-92
drwxr-xr-x  3 jhuang jhuang 4,0K Jun 18  2024  Data_PaulBecher_Rotavirus
drwxr-xr-x 21 jhuang jhuang 4,0K Jun 18  2024  Data_Pietschmann_HCV_Amplicon_bigFile
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024  Data_Piscine_Orthoreovirus_3_in_Brown_Trout
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024  Data_Proteomics
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024  Data_RNABioinformatics
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024  Data_RNAKinetics
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024  Data_R_courses
drwxr-xr-x  5 jhuang jhuang 4,0K Jun 18  2024  Data_SARS-CoV-2
drwxr-xr-x  9 jhuang jhuang 4,0K Jun 18  2024  Data_SARS-CoV-2_Genome_Announcement_PUBLISHED
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024  Data_Seite
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024  Data_Song_aggregate_sum
drwxr-xr-x  3 jhuang jhuang 4,0K Jun 18  2024  Data_Susanne_Amplicon_RdRp_orf1_2_re
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024  Data_Tabea_RNASeq
drwxr-xr-x  5 jhuang jhuang 4,0K Jun 18  2024  Data_Thaiss1_Microarray_new
drwxr-xr-x 10 jhuang jhuang 4,0K Jun 18  2024  Data_Tintelnot_16S
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024  Data_Wuenee_Plots
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024  Data_Yang_Poster
drwxr-xr-x  4 jhuang jhuang 4,0K Jun 18  2024  Data_jupnote
drwxr-xr-x 21 jhuang jhuang 4,0K Jun 18  2024  Data_parainfluenza
drwxr-xr-x  9 jhuang jhuang 4,0K Jun 18  2024  Data_snakemake_recipe
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024  Data_temp
drwxr-xr-x  3 jhuang jhuang 4,0K Jun 18  2024  Data_viGEN
drwxr-xr-x 19 jhuang jhuang 4,0K Jun 18  2024  Genomic_Data_Science
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024  Learn_UGENE
drwxr-xr-x  5 jhuang jhuang 4,0K Jun 18  2024  MMcPaper
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024  Manuscript_Epigenetics_Macrophage_Yersinia
drwxr-xr-x  6 jhuang jhuang 4,0K Jun 18  2024  Manuscript_RNAHiSwitch
drwxr-xr-x  4 jhuang jhuang 4,0K Jun 18  2024  MeDIP_Emilia_copy_DEL
drwxr-xr-x  5 jhuang jhuang 4,0K Jun 18  2024  Method_biopython
drwxr-xr-x  4 jhuang jhuang 4,0K Jun 18  2024  NGS
drwxr-xr-x  5 jhuang jhuang 4,0K Jun 18  2024  Okazaki-Seq_Processing
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024  RNA-NGS_Analysis_modul3_NanoStringNorm
drwxr-xr-x  5 jhuang jhuang 4,0K Jun 18  2024  RNAConSLOptV1.2
drwxr-xr-x  9 jhuang jhuang 4,0K Jun 18  2024  RNAHeliCes
drwxr-xr-x 11 jhuang jhuang 4,0K Jun 18  2024  RNA_li_HeliCes
drwxr-xr-x 10 jhuang jhuang 4,0K Jun 18  2024  RNAliHeliCes
drwxr-xr-x 10 jhuang jhuang 4,0K Jun 18  2024  RNAliHeliCes_Relatedshapes_modified
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024  R_refcard
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024  R_DataCamp
drwxr-xr-x  3 jhuang jhuang 4,0K Jun 18  2024  R_cats_package
drwxr-xr-x  9 jhuang jhuang 4,0K Jun 18  2024  R_tutorials-master
drwxr-xr-x  7 jhuang jhuang 4,0K Jun 18  2024  SnakeChunks
drwxr-xr-x  6 jhuang jhuang 4,0K Jun 18  2024  align_4l_on_FJ705359
drwxr-xr-x  5 jhuang jhuang 4,0K Jun 18  2024  align_4p_on_FJ705359
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024  assembly
drwxr-xr-x  6 jhuang jhuang 4,0K Jun 18  2024  bacto
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024  bam2fastq_mapping_again
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024  chipster
drwxr-xr-x  5 jhuang jhuang 4,0K Jun 18  2024  damian_GUI
drwxr-xr-x  4 jhuang jhuang 4,0K Jun 18  2024  enhancer-snakemake-demo
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024  hg19_gene_annotations
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024  interlab_comparison_DEL
drwxr-xr-x  5 jhuang jhuang 4,0K Jun 18  2024  my_flask
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024  papers
drwxr-xr-x  6 jhuang jhuang 4,0K Jun 18  2024  pangenome-snakemake_zhaoc1
drwxr-xr-x 14 jhuang jhuang 4,0K Jun 18  2024  pyflow-epilogos
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024  raw_data_rnaseq_Indra
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024  test_raw_data_dnaseq
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024  test_raw_data_rnaseq
drwxr-xr-x  6 jhuang jhuang 4,0K Jun 18  2024  to_Francesco
drwxr-xr-x 36 jhuang jhuang 4,0K Jun 18  2024  ukepipe
drwxr-xr-x 15 jhuang jhuang 4,0K Jun 18  2024  ukepipe_nf
drwxr-xr-x 17 jhuang jhuang 4,0K Jun 18  2024  var_www_DjangoApp_mysite2_2023-05
-rwxr-xr-x  1 jhuang jhuang  59K Jun 18  2024  roentgenpass.pdf
-rwxr-xr-x  1 jhuang jhuang 9,1M Jun 18  2024  salmon_tx2gene_GRCh38.tsv
-rwxr-xr-x  1 jhuang jhuang 4,1K Jun 18  2024  salmon_tx2gene_chrHsv1.tsv
-rwxr-xr-x  1 jhuang jhuang 8,9K Jun 18  2024 'sample IDs_Lamprecht.xlsx'
-rwxr-xr-x  1 jhuang jhuang  30M Jun 18  2024  summarySCC_PM25.rds
-rwxr-xr-x  1 jhuang jhuang    0 Jun 18  2024  untitled.py
-rwxr-xr-x  1 jhuang jhuang  11M Jun 18  2024  tutorial-rnaseq.pdf
-rwxr-xr-x  1 jhuang jhuang 1,3K Jun 18  2024  x.log
-rwxr-xr-x  1 jhuang jhuang 381M Jun 18  2024  webapp.tar.gz
-rw-rw-r--  1 jhuang jhuang 8,4K Okt  9  2024  temp
-rw-rw-r--  1 jhuang jhuang 2,7K Okt  9  2024  temp2
drwxr-xr-x 51 jhuang jhuang  12K Feb 17 12:23  Data_Susanne_Amplicon_haplotype_analyses_RdRp_orf1_2_re
drwxr-xr-x  6 jhuang jhuang 4,0K Feb 17 12:42  Data_Susanne_WGS_unbiased

jhuang@WS-2290C:~/DATA_D$ ls -tlrh
total 56K
lrwxrwxrwx  1 jhuang jhuang   59 Apr 11  2024 Data_Soeren_RNA-seq_2023_PUBLISHING -> /media/jhuang/Elements/Data_Soeren_RNA-seq_2023_PUBLISHING/
lrwxrwxrwx  1 jhuang jhuang   32 Apr 11  2024 Data_Ute -> /media/jhuang/Elements/Data_Ute/
lrwxrwxrwx  1 jhuang jhuang   52 Apr 23  2024 Data_Marc_RNA-seq_Sepidermidis -> /media/jhuang/Titisee/Data_Marc_RNA-seq_Sepidermidis
drwxrwxr-x  2 jhuang jhuang 4,0K Mai  2  2024 Data_Patricia_Transposon
drwxrwxr-x  2 jhuang jhuang 4,0K Mai 29  2024 Books_DA_for_Life
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 18  2024 Data_Sven
-rw-rw-r--  1 jhuang jhuang 2,9K Jul 16  2024 Datasize_calculation_based_on_coverage.txt
drwxr-xr-x  6 jhuang jhuang 4,0K Jul 23  2024 Data_Paul_HD46_1-wt_resequencing
drwxrwxr-x  2 jhuang jhuang 4,0K Jul 26  2024 Data_Sanam_DAMIAN
drwxrwxr-x 26 jhuang jhuang  12K Jul 30  2024 Data_Tam_variant_calling
drwxrwxr-x  2 jhuang jhuang 4,0K Aug 26  2024 Data_Samira_Manuscripts
drwxrwxr-x  2 jhuang jhuang 4,0K Aug 27  2024 Data_Silvia_VoltRon_Debug
drwxrwxr-x 38 jhuang jhuang 4,0K Jun 10  2025 Data_Pietschmann_229ECoronavirus_Mutations_2024
drwxrwxr-x 23 jhuang jhuang 4,0K Jun 25  2025 Data_Pietschmann_229ECoronavirus_Mutations_2025
lrwxrwxrwx  1 jhuang jhuang   63 Nov 24 16:30 Data_Birthe_Svenja_RSV_Probe3_PUBLISHING -> /media/jhuang/Elements/Data_Birthe_Svenja_RSV_Probe3_PUBLISHING

jhuang@WS-2290C:~/DATA_E$ ls -tlrh
total 119M
drwxr-xr-x 10 jhuang jhuang 4,0K Apr 18  2019 j_huang_until_201904
drwxr-xr-x  2 jhuang jhuang 4,0K Apr 29  2019 Data_2019_April
drwxr-xr-x  2 jhuang jhuang 4,0K Mai 10  2019 Data_2019_May
drwxr-xr-x  2 jhuang jhuang 4,0K Jun 17  2019 Data_2019_June
drwxr-xr-x  2 jhuang jhuang 4,0K Jul 12  2019 Data_2019_July
drwxr-xr-x  3 jhuang jhuang 4,0K Aug 29  2019 Data_2019_August
drwxr-xr-x  3 jhuang jhuang 4,0K Sep  5  2019 Data_2019_September
drwxr-xr-x 11 jhuang jhuang 4,0K Apr 18  2023 Data_Song_RNASeq_PUBLISHED
drwxr-xr-x  7 jhuang jhuang 4,0K Okt 10  2023 Data_Laura_MP_RNASeq
drwxr-xr-x 22 jhuang jhuang  12K Nov  3  2023 Data_Nicole6_HEV_Swantje2
drwxr-xr-x 17 jhuang jhuang 4,0K Nov 13  2023 Data_Becher_Damian_Picornavirus_BovHepV
-rwxr-xr-x  1 jhuang jhuang 118M Nov 28  2023 bacteria_refseq.zip
drwxr-xr-x  3 jhuang jhuang 4,0K Nov 30  2023 bacteria_refseq
drwxr-xr-x  8 jhuang jhuang 4,0K Nov 30  2023 Data_Rotavirus
drwxr-xr-x  6 jhuang jhuang 4,0K Dez  6  2023 Data_Xiaobo_10x
drwx------ 17 jhuang jhuang 4,0K Feb  7  2025 Data_Becher_Damian_Picornavirus_BovHepV_INCOMPLETE_DEL

jhuang@WS-2290C:~/DATA_Intenso$ ls -ltrh
total 4,1G
drwxr-xr-x  15 jhuang jhuang 4,0K Mär 30  2015  HOME_FREIBURG_DEL
drwxr-xr-x   2 jhuang jhuang 4,0K Aug 12  2015  150810_M03701_0019_000000000-AFJFK
drwxr-xr-x   5 jhuang jhuang 4,0K Jan 31  2017  Data_Thaiss2_Microarray
drwxr-xr-x   9 jhuang jhuang 4,0K Apr 27  2017  VirtualBox_VMs_DEL
drwxr-xr-x   7 jhuang jhuang 4,0K Apr 27  2017 'VirtualBox VMs_DEL'
drwxr-xr-x   7 jhuang jhuang 4,0K Apr 27  2017 'VirtualBox VMs2_DEL'
drwxr-xr-x  16 jhuang jhuang 4,0K Mai 12  2017  websites
drwxr-xr-x   5 jhuang jhuang 4,0K Jun 29  2017  DATA
drwxr-xr-x 149 jhuang jhuang  36K Jun 30  2017  Data_Laura
drwxr-xr-x 149 jhuang jhuang  36K Jun 30  2017  Data_Laura_2
drwxr-xr-x   3 jhuang jhuang 4,0K Jun 30  2017  Data_Laura_3
drwxr-xr-x   7 jhuang jhuang 4,0K Jul 10  2017  galaxy_tools
drwxr-xr-x  45 jhuang jhuang  32K Jul 17  2017  Downloads2
drwxr-xr-x   3 jhuang jhuang 4,0K Jul 27  2017  Downloads
drwxr-xr-x   3 jhuang jhuang 4,0K Jul 28  2017  mom-baby_com_cn
drwxr-xr-x   3 jhuang jhuang 4,0K Aug  8  2017 'VirtualBox VMs2'
drwxr-xr-x   3 jhuang jhuang 4,0K Aug  9  2017  VirtualBox_VMs
drwxr-xr-x   3 jhuang jhuang 4,0K Aug 11  2017  CLC_Data
drwxr-xr-x   6 jhuang jhuang  12K Aug 14  2017  Work_Dir2
drwxr-xr-x   7 jhuang jhuang 4,0K Aug 15  2017  Work_Dir2_SGE
drwxr-xr-x  19 jhuang jhuang 4,0K Aug 24  2017  Data_SPANDx1_Kpneumoniae_vs_Assembly1
drwxr-xr-x   3 jhuang jhuang 4,0K Aug 24  2017  MauveOutput
drwxr-xr-x   3 jhuang jhuang 4,0K Aug 31  2017  Fastqs
drwxr-xr-x  20 jhuang jhuang 4,0K Sep  7  2017  Data_Anna3_VRE_Ausbruch
drwxr-xr-x   8 jhuang jhuang 4,0K Sep 19  2017  Work_Dir_mock_broad_mockinput
drwxr-xr-x   8 jhuang jhuang 4,0K Sep 19  2017  Work_Dir_dM_broad_mockinput
drwxr-xr-x   4 jhuang jhuang 4,0K Okt  6  2017  Data_Anna8_RNASeq_static_shake_deprecated
drwxr-xr-x  24 jhuang jhuang 4,0K Okt  9  2017  PENDRIVE_cont
drwxr-xr-x   8 jhuang jhuang 4,0K Okt 23  2017  Work_Dir_WAP_broad_mockinput
drwxr-xr-x  10 jhuang jhuang 4,0K Okt 23  2017  Work_Dir_WAC_broad_mockinput
drwxr-xr-x  11 jhuang jhuang 4,0K Okt 23  2017  Work_Dir_dP_broad_mockinput
drwxr-xr-x  52 jhuang jhuang 4,0K Nov  8  2017  Data_Nicole10_16S_interlab
drwxr-xr-x   6 jhuang jhuang 4,0K Dez  6  2017  PAPERS
drwxr-xr-x  14 jhuang jhuang  16K Dez 15  2017  TB
drwxr-xr-x   5 jhuang jhuang 4,0K Dez 19  2017  Data_Anna4_SNP
drwxr-xr-x  11 jhuang jhuang 4,0K Jan 16  2018  Data_Carolin1_16S
drwxr-xr-x   2 jhuang jhuang 4,0K Jan 22  2018  ChipSeq_Raw_Data3_171009_NB501882_0024_AHNGTYBGX3
-rw-r--r--   1 jhuang jhuang 4,0G Jan 23  2018  m_aepfelbacher_DEL.zip
drwxr-xr-x   7 jhuang jhuang 4,0K Jan 24  2018  Data_Anna7_RNASeq_Cytoscape
drwxr-xr-x   3 jhuang jhuang 4,0K Jan 24  2018  Data_Nicole9_Hund_Katze_Mega
drwxr-xr-x  39 jhuang jhuang  20K Jan 28  2018  Data_Anna2_CO6114
drwxr-xr-x   3 jhuang jhuang 4,0K Jan 28  2018  Data_Nicole3_TH17_orig
drwxr-xr-x  27 jhuang jhuang  28K Jan 28  2018  Data_Nicole1_Tropheryma_whipplei
drwxr-xr-x  16 jhuang jhuang 4,0K Jan 30  2018  results_K27
drwxr-xr-x   2 jhuang jhuang 4,0K Feb 19  2018 'VirtualBox VMs'
drwxr-xr-x  28 jhuang jhuang  12K Feb 27  2018  Data_Anna6_RNASeq
drwxr-xr-x  17 jhuang jhuang  12K Mär  1  2018  Data_Anna1_1585_RNAseq
drwxr-xr-x  21 jhuang jhuang 4,0K Mär  7  2018  Data_Thaiss1_Microarray
drwxr-xr-x  25 jhuang jhuang  12K Mär 27  2018  Data_Nicole7_Anelloviruses_Polyomavirus
drwxr-xr-x  13 jhuang jhuang 4,0K Mai 22  2018  Data_Nina1_Nicole5_1-76
drwxr-xr-x  11 jhuang jhuang 4,0K Mai 22  2018  Data_Nina1_merged
drwxr-xr-x  32 jhuang jhuang 4,0K Jun 14  2018  Data_Nicole8_Lamprecht
drwxr-xr-x  40 jhuang jhuang  16K Jul  5  2018  Data_Anna5_SNP
drwxr-xr-x  35 jhuang jhuang 4,0K Okt 12  2018  chipseq
drwxr-xr-x 107 jhuang jhuang  76K Mai 18  2019  Downloads_DEL
drwxr-xr-x   7 jhuang jhuang 4,0K Mär 17  2020  Data_Gagliani2_enriched_16S
drwxr-xr-x  17 jhuang jhuang 4,0K Mär 17  2020  Data_Gagliani1_18S_16S
drwxr-xr-x   2 jhuang jhuang 4,0K Apr  2  2020  m_aepfelbacher
drwxr-xr-x   4 jhuang jhuang 4,0K Feb 17 12:38  Data_Susanne_WGS_3amplicons

jhuang@WS-2290C:/media/jhuang/Titisee$ ls -tlrh
total 3,5G
drwxrwxrwx 1 jhuang jhuang    0 Dez 19  2017  Data_Anna4_SNP
drwxrwxrwx 1 jhuang jhuang 4,0K Jan 24  2018  Data_Anna5_SNP_rsync_error
-rwxrwxrwx 1 jhuang jhuang 9,9K Mär 21  2018  TRASH
drwxrwxrwx 1 jhuang jhuang  20K Mär 28  2018  Data_Nicole6_HEV_4_SNP_calling_PE_DEL
drwxrwxrwx 1 jhuang jhuang 4,0K Mai 22  2018  Data_Nina1_Nicole7
drwxrwxrwx 1 jhuang jhuang 8,0K Mai 24  2018  Data_Nicole6_HEV_4_SNP_calling_SE_DEL
-rwxrwxrwx 1 jhuang jhuang 3,5G Jun 14  2018  180119_M03701_0115_000000000-BFG46.zip
drwxrwxrwx 1 jhuang jhuang 4,0K Jul 10  2018  Data_Nicole10_16S_interlab_PUBLISHED
drwxrwxrwx 1 jhuang jhuang 4,0K Jul 10  2018  Anna11_assemblies
drwxrwxrwx 1 jhuang jhuang 4,0K Jul 11  2018  Anna11_trees
drwxrwxrwx 1 jhuang jhuang 4,0K Jul 24  2018  Data_Nicole6_HEV_new_orig_fastqs
drwxrwxrwx 1 jhuang jhuang 4,0K Nov 23  2018  Data_Anna9_OXA-48_or_OXA-181
drwxrwxrwx 1 jhuang jhuang 4,0K Feb 15  2019  bengal_results_v1_2018
-rwxrwxrwx 1 jhuang jhuang 9,8M Mär 22  2019  DO.pdf
drwxrwxrwx 1 jhuang jhuang 4,0K Mai  6  2019  damian_DEL
drwxrwxrwx 1 jhuang jhuang    0 Mai 20  2019  MAGpy_db
drwxrwxrwx 1 jhuang jhuang    0 Aug  3  2019  UGENE_v1_32_data_cistrome
drwxrwxrwx 1 jhuang jhuang 4,0K Aug  3  2019  UGENE_v1_32_data_ngs_classification
drwxrwxrwx 1 jhuang jhuang  52K Okt 25  2019  Data_Nicole6_HEV_Swantje
drwxrwxrwx 1 jhuang jhuang 8,0K Okt 25  2019  Data_Nico_Gagliani
drwxrwxrwx 1 jhuang jhuang 4,0K Mär 30  2020  GAMOLA2_prototyp
drwxrwxrwx 1 jhuang jhuang 8,0K Mär 31  2020  Thomas_methylation_EPIC_DO
drwxrwxrwx 1 jhuang jhuang 8,0K Jun 15  2020  Data_Nicola_Schaltenberg
drwxrwxrwx 1 jhuang jhuang  36K Jun 25  2020  Data_Nicola_Schaltenberg_PICRUSt
drwxrwxrwx 1 jhuang jhuang  12K Jan 25  2021  HOME_FREIBURG
drwxrwxrwx 1 jhuang jhuang 4,0K Okt 13  2021  Data_Francesco_16S
drwxrwxrwx 1 jhuang jhuang 4,0K Jun 14  2022  3rd_party
drwxrwxrwx 1 jhuang jhuang 4,0K Jul 29  2022  ConsPred_prokaryotic_genome_annotation
drwxrwxrwx 1 jhuang jhuang 4,0K Aug  2  2022 'System Volume Information'
drwxrwxrwx 1 jhuang jhuang    0 Sep 16  2022  damian_v201016
drwxrwxrwx 1 jhuang jhuang  36K Jan 12  2023  Data_Holger_VRE
drwxrwxrwx 1 jhuang jhuang  32K Feb  1  2023  Data_Holger_Pseudomonas_aeruginosa_SNP
drwxrwxrwx 1 jhuang jhuang 4,0K Sep  5  2023  Eigene_Ordner_HR
drwxrwxrwx 1 jhuang jhuang  24K Sep  6  2023  GAMOLA2
drwxrwxrwx 1 jhuang jhuang  24K Sep 27  2023  Data_Anastasia_RNASeq
drwxrwxrwx 1 jhuang jhuang  24K Okt 20  2023  Data_Amir_PUBLISHED
drwxrwxrwx 1 jhuang jhuang  44K Apr 25  2024  Data_Marc_RNA-seq_Sepidermidis
drwxrwxrwx 1 jhuang jhuang 4,0K Sep 23  2024 '$RECYCLE.BIN'
drwxrwxrwx 1 jhuang jhuang 4,0K Sep 23  2024  Data_Xiaobo_10x_3
drwxrwxrwx 1 jhuang jhuang  24K Nov 28  2024  Data_Tam_DNAseq_2023_Comparative_ATCC19606_AYE_ATCC17978
drwxrwxrwx 1 jhuang jhuang  48K Dez 19  2024  Data_Holger_S.epidermidis_short
-rwxrwxrwx 1 jhuang jhuang   31 Feb  4  2025  TEMP
drwxrwxrwx 1 jhuang jhuang  12K Aug 22 11:44  Data_Holger_S.epidermidis_long

jhuang@WS-2290C:/media/jhuang/Elements(Denise_ChIPseq)$ ls -tlrh
total 11M
drwxr-xr-x 1 jhuang jhuang 4,0K Jun  7  2019  Data_Denise_LTtrunc_H3K27me3_2_results_DEL
drwxr-xr-x 1 jhuang jhuang 4,0K Jun  7  2019  Data_Denise_LTtrunc_H3K4me3_2_results_DEL
drwxr-xr-x 1 jhuang jhuang  28K Aug 26  2019  Data_Anna12_HAPDICS_final_not_finished_DEL
drwxr-xr-x 1 jhuang jhuang 4,0K Okt 24  2019  m_aepfelbacher_DEL
drwxr-xr-x 1 jhuang jhuang  20K Jan 14  2020  Data_Damian
drwxr-xr-x 1 jhuang jhuang 4,0K Jan 25  2020  ST772_DEL
drwxr-xr-x 1 jhuang jhuang 160K Jan 25  2020  ALL_trimmed_part_DEL
drwxr-xr-x 1 jhuang jhuang    0 Mär 30  2020  Data_Denise_ChIPSeq_Protocol1
drwxr-xr-x 1 jhuang jhuang  44K Mai 19  2020  Data_Pietschmann_HCV_Amplicon
drwxr-xr-x 1 jhuang jhuang  60K Jun 26  2020  Data_Nicole6_HEV_ownMethod_new
-rwxr-xr-x 1 jhuang jhuang 2,5M Aug  5  2020  HD04-1.fasta
drwxr-xr-x 1 jhuang jhuang 4,0K Mai 31  2021  RNAHiSwitch_
drwxr-xr-x 1 jhuang jhuang 4,0K Mai 31  2021  RNAHiSwitch__
drwxr-xr-x 1 jhuang jhuang 8,0K Jun 17  2021  RNAHiSwitch___
drwxr-xr-x 1 jhuang jhuang 4,0K Jun 25  2021  RNAHiSwitch_paper_
drwxr-xr-x 1 jhuang jhuang    0 Jul  7  2021  RNAHiSwitch_milestone1_DELETED
-rwxr-xr-x 1 jhuang jhuang 7,2M Jul  7  2021  RNAHiSwitch_paper.tar.gz
drwxr-xr-x 1 jhuang jhuang 4,0K Jul 12  2021  RNAHiSwitch_paper_DELETED
drwxr-xr-x 1 jhuang jhuang  12K Jul 12  2021  RNAHiSwitch_milestone1
drwxr-xr-x 1 jhuang jhuang 4,0K Aug 23  2021  RNAHiSwitch_paper
drwxr-xr-x 1 jhuang jhuang 4,0K Sep 24  2021  Ute_RNASeq_results
drwxr-xr-x 1 jhuang jhuang 4,0K Sep 24  2021  Ute_miRNA_results_38
drwxr-xr-x 1 jhuang jhuang  88K Okt 27  2021  RNAHiSwitch
drwxr-xr-x 1 jhuang jhuang  48K Mär 31  2022  Data_HepE_Freiburg_PUBLISHED
drwxr-xr-x 1 jhuang jhuang 4,0K Jun  1  2022  Data_INTENSO_2022-06
drwxr-xr-x 1 jhuang jhuang    0 Sep 14  2022 '$RECYCLE.BIN'
drwxr-xr-x 1 jhuang jhuang 4,0K Sep 14  2022 'System Volume Information'
drwxr-xr-x 1 jhuang jhuang 4,0K Dez  7  2022  Data_Anna_Mixta_hanseatica_PUBLISHED
-rwxr-xr-x 1 jhuang jhuang  33K Dez  9  2022  coi_disclosure.docx
drwxr-xr-x 1 jhuang jhuang  20K Feb  8  2023  Data_Jingang
drwxr-xr-x 1 jhuang jhuang 4,0K Mai 30  2023  Data_Arck_16S_MMc_PUBLISHED
drwxr-xr-x 1 jhuang jhuang 4,0K Jun  5  2023  Data_Laura_ChIPseq_GSE120945
drwxr-xr-x 1 jhuang jhuang  80K Jun  5  2023  Data_Nicole6_HEV_ownMethod
drwxr-xr-x 1 jhuang jhuang 8,0K Jul  5  2023  Data_Susanne_16S_re_UNPUBLISHED *
drwxr-xr-x 1 jhuang jhuang 4,0K Okt 12  2023  Data_Denise_ChIPSeq_Protocol2
drwxr-xr-x 1 jhuang jhuang 4,0K Okt 20  2023  Data_Caroline_RNAseq_wt_timecourse
drwxr-xr-x 1 jhuang jhuang 4,0K Okt 20  2023  Data_Caroline_RNAseq_brain_organoids
drwxr-xr-x 1 jhuang jhuang  20K Okt 20  2023  Data_Amir_PUBLISHED_DEL
drwxr-xr-x 1 jhuang jhuang 4,0K Nov 24  2023  Data_download_virus_fam
drwxr-xr-x 1 jhuang jhuang  12K Feb 22  2024  Data_Gunnar_Yersiniomics_COPYFAILED_DEL
drwxr-xr-x 1 jhuang jhuang  20K Feb 27  2024  Data_Paul_and_Marc_Epidome_batch3
-rwxr-xr-x 1 jhuang jhuang 3,0K Okt 30  2024  ifconfig_hamm.txt
drwxr-xr-x 1 jhuang jhuang 8,0K Apr  8  2025  Data_Soeren_2023_PUBLISHING
drwxr-xr-x 1 jhuang jhuang  28K Nov 24 13:34  Data_Birthe_Svenja_RSV_Probe3_PUBLISHING
drwxr-xr-x 1 jhuang jhuang  20K Jan 13 17:46  Data_Ute
drwxr-xr-x 1 jhuang jhuang  12K Feb 17 12:48  Data_Susanne_16S_UNPUBLISHED *

jhuang@WS-2290C:/media/jhuang/Seagate Expansion Drive(HOffice)$ ls -tlrh
total 19M
-rwxrwxrwx 1 jhuang jhuang 550K Jan  8  2015  SeagateExpansion.ico
-rwxrwxrwx 1 jhuang jhuang   38 Mär 27  2015  Autorun.inf
-rwxrwxrwx 2 jhuang jhuang  18M Mai  4  2017  Start_Here_Win.exe
-rwxrwxrwx 1 jhuang jhuang 1,1M Jul  7  2017  Warranty.pdf
drwxrwxrwx 1 jhuang jhuang    0 Jan  9  2018  Start_Here_Mac.app
drwxrwxrwx 1 jhuang jhuang    0 Jan  9  2018  Seagate
drwxrwxrwx 1 jhuang jhuang    0 Jun  5  2024  HomeOffice_DIR (Data_Anna_HAPDICS_RNASeq, From_Samsung_T5)
drwxrwxrwx 1 jhuang jhuang 4,0K Jun 17  2024  DATA_COPY_FROM_178528 (copy_and_clean.sh, logfile_jhuang.log, jhuang)
drwxrwxrwx 1 jhuang jhuang    0 Sep  9 10:41 'System Volume Information'
drwxrwxrwx 1 jhuang jhuang    0 Sep  9 10:41 '$RECYCLE.BIN'

jhuang@WS-2290C:/media/jhuang/Elements(Anna_C.arnes)$ ls -trlh
total 236K
drwxrwxrwx 1 jhuang jhuang 8,0K Nov 14  2018  Data_Swantje_HEV_using_viral-ngs
drwxrwxrwx 1 jhuang jhuang    0 Dez  4  2018  VIPER_static_DEL
drwxrwxrwx 1 jhuang jhuang 4,0K Apr  4  2019  Data_Nicole6_HEV_Swantje1_blood
drwxrwxrwx 1 jhuang jhuang  24K Apr  5  2019  Data_Nicole6_HEV_benchmark
drwxrwxrwx 1 jhuang jhuang  20K Mär 12  2020  Data_Denise_RNASeq_GSE79958
drwxrwxrwx 1 jhuang jhuang 8,0K Jan 11  2022  Data_16S_Leonie_from_Nico_Gaglianis
drwxrwxrwx 1 jhuang jhuang 8,0K Jul 29  2022  Fastqs_19-21
drwxrwxrwx 1 jhuang jhuang 4,0K Aug  2  2022 'System Volume Information'
drwxrwxrwx 1 jhuang jhuang 8,0K Sep 23  2022  Data_Luise_Epidome_test
drwxrwxrwx 1 jhuang jhuang  48K Sep 27  2023  Data_Anna_C.acnes_PUBLISHED
drwxrwxrwx 1 jhuang jhuang  24K Dez  6  2023  Data_Denise_LT_DNA_Bindung
drwxrwxrwx 1 jhuang jhuang 4,0K Jan  9  2024  Data_Denise_LT_K331A_RNASeq
drwxrwxrwx 1 jhuang jhuang  12K Jan 10  2024  Data_Luise_Epidome_batch1
drwxrwxrwx 1 jhuang jhuang  28K Feb 26  2024  Data_Luise_Pseudomonas_aeruginosa_PUBLISHED
drwxrwxrwx 1 jhuang jhuang  28K Feb 27  2024  Data_Luise_Epidome_batch2
drwxrwxrwx 1 jhuang jhuang 4,0K Sep  5  2024  picrust2_out_2024_2
drwxrwxrwx 1 jhuang jhuang 4,0K Mär 11  2025 '$RECYCLE.BIN'

jhuang@WS-2290C:/media/jhuang/Seagate Expansion Drive(DATA_COPY_FROM_hamburg)$ ls -tlrh
total 19M
-rwxrwxrwx 1 jhuang jhuang   33 Feb 21  2018 Autorun.inf
-rwxrwxrwx 2 jhuang jhuang  18M Jun 21  2019 Start_Here_Win.exe
-rwxrwxrwx 1 jhuang jhuang 1,6M Jul  6  2020 Warranty.pdf
drwxrwxrwx 1 jhuang jhuang    0 Mär 10  2021 Start_Here_Mac.app
drwxrwxrwx 1 jhuang jhuang    0 Mär 10  2021 Seagate
drwxrwxrwx 1 jhuang jhuang  12K Jun 29  2022 DATA_COPY_TRANSFER_INCOMPLETE_DEL
drwxrwxrwx 1 jhuang jhuang 4,0K Dez 16  2024 DATA_COPY_FROM_hamburg

jhuang@WS-2290C:/media/jhuang/Seagate Expansion Drive(Seagate_1)$ ls -trlh
total 104G
drwxr-xr-x 1 jhuang jhuang 4,0K Okt  3  2013  RNA_seq_analysis_tools_2013
drwxr-xr-x 1 jhuang jhuang    0 Feb 28  2018  Data_Laura0
drwxr-xr-x 1 jhuang jhuang 8,0K Sep  6  2018  Data_Petra_Arck
drwxr-xr-x 1 jhuang jhuang 4,0K Sep 14  2018  Data_Martin_mycoplasma
drwxr-xr-x 1 jhuang jhuang 8,0K Dez  5  2018  chromhmm-enhancers
drwxr-xr-x 1 jhuang jhuang 4,0K Jan 15  2019  ChromHMM_Dir
drwxr-xr-x 1 jhuang jhuang 4,0K Jan 18  2019  Data_Denise_sT_H3K4me3
drwxr-xr-x 1 jhuang jhuang 4,0K Jan 18  2019  Data_Denise_sT_H3K27me3
drwxr-xr-x 1 jhuang jhuang    0 Feb 13  2019  Start_Here_Mac.app
drwxr-xr-x 1 jhuang jhuang    0 Feb 13  2019  Seagate
drwxr-xr-x 1 jhuang jhuang 4,0K Feb 19  2019  Data_Nicole16_parapoxvirus
-rwxr-xr-x 1 jhuang jhuang  39G Aug 20  2019  Project_h_rohde_Susanne_WGS_unbiased_DEL.zip
drwxr-xr-x 1 jhuang jhuang 4,0K Nov 11  2019  Data_Denise_ChIPSeq_Protocol1
drwxr-xr-x 1 jhuang jhuang 8,0K Nov 13  2019  Data_ENNGS_pathogen_detection_pipeline_comparison
drwxr-xr-x 1 jhuang jhuang 4,0K Feb 18  2020  j_huang_201904_202002
-rwxr-xr-x 1 jhuang jhuang  112 Mär  2  2020  Data_Laura_ChIPseq_GSE120945
drwxr-xr-x 1 jhuang jhuang 8,0K Mär 26  2020  batch_200314_incomplete
-rwxr-xr-x 1 jhuang jhuang  65G Mär 26  2020  m_aepfelbacher.zip
drwxr-xr-x 1 jhuang jhuang    0 Mär 26  2020  m_error_DEL
drwxr-xr-x 1 jhuang jhuang 4,0K Mär 28  2020  batch_200325
drwxr-xr-x 1 jhuang jhuang 4,0K Mär 28  2020  batch_200319
drwxr-xr-x 1 jhuang jhuang 4,0K Mär 30  2020  GAMOLA2_prototyp
drwxr-xr-x 1 jhuang jhuang 4,0K Jun 22  2020  Data_Nicola_Gagliani
drwxr-xr-x 1 jhuang jhuang 4,0K Sep  3  2020  2017-18_raw_data
drwxr-xr-x 1 jhuang jhuang 1,2M Sep 11  2020  Data_Arck_MeDIP
drwxr-xr-x 1 jhuang jhuang 4,0K Okt 16  2020  trimmed
drwxr-xr-x 1 jhuang jhuang 4,0K Dez 23  2020  Data_Nicole_16S_Christmas_2020_2
drwxr-xr-x 1 jhuang jhuang 4,0K Jan 14  2021  j_huang_202007_202012
drwxr-xr-x 1 jhuang jhuang 4,0K Jan 15  2021  Data_Nicole_16S_Christmas_2020
drwxr-xr-x 1 jhuang jhuang 184K Jan 18  2021  Downloads_2021-01-18_DEL
drwxr-xr-x 1 jhuang jhuang 4,0K Jan 28  2021  Data_Laura_plasmid
drwxr-xr-x 1 jhuang jhuang 4,0K Mär 18  2021  Data_Laura_16S_2_re
drwxr-xr-x 1 jhuang jhuang 8,0K Mär 22  2021  Data_Laura_16S_2
drwxr-xr-x 1 jhuang jhuang 4,0K Mär 22  2021  Data_Laura_16S_2_re_
drwxr-xr-x 1 jhuang jhuang 8,0K Mär 23  2021  Data_Laura_16S_merged
drwxr-xr-x 1 jhuang jhuang  32K Nov  7  2022  Downloads_DEL
drwxr-xr-x 1 jhuang jhuang  12K Nov  7  2022  Data_Laura_16S
drwxr-xr-x 1 jhuang jhuang  76K Nov  9  2023  Data_Anna12_HAPDICS_final
drwxr-xr-x 1 jhuang jhuang    0 Dez  4  2023 '$RECYCLE.BIN'
drwxr-xr-x 1 jhuang jhuang 4,0K Dez  4  2023 'System Volume Information'

jhuang@WS-2290C:/media/jhuang/Seagate Expansion Drive(Seagate_2)$ ls -trlh
total 70G
drwxr-xr-x 1 jhuang jhuang 4,0K Jan  5  2017  Data_Nicole4_TH17
-rwxr-xr-x 1 jhuang jhuang  18M Feb  9  2018  Start_Here_Win.exe
-rwxr-xr-x 1 jhuang jhuang   33 Feb 21  2018  Autorun.inf
-rwxr-xr-x 1 jhuang jhuang 1,2M Jul 26  2018  Warranty.pdf
drwxr-xr-x 1 jhuang jhuang    0 Feb 13  2019  Start_Here_Mac.app
drwxr-xr-x 1 jhuang jhuang    0 Feb 13  2019  Seagate
drwxr-xr-x 1 jhuang jhuang 4,0K Dez 20  2019  Data_Denise_RNASeq_trimmed_DEL
drwxr-xr-x 1 jhuang jhuang 4,0K Jan 25  2020  HD12
drwxr-xr-x 1 jhuang jhuang 4,0K Jan 25  2020  Qi_panGenome
drwxr-xr-x 1 jhuang jhuang  44K Jan 25  2020  ALL
drwxr-xr-x 1 jhuang jhuang    0 Feb 14  2020  fastq_HPI_bw_2019_08_and_2020_02
-rwxr-xr-x 1 jhuang jhuang  19K Mär 12  2020  f1_R1_link.sh
-rwxr-xr-x 1 jhuang jhuang  19K Mär 12  2020  f1_R2_link.sh
drwxr-xr-x 1 jhuang jhuang  28K Mär 19  2020  rtpd_files
-rwxr-xr-x 1 jhuang jhuang  65G Apr  2  2020  m_aepfelbacher.zip
drwxr-xr-x 1 jhuang jhuang 4,0K Apr 20  2020  Data_Nicole_16S_Hamburg_Odense_Cornell_Muenster
drwxr-xr-x 1 jhuang jhuang 8,0K Apr 21  2020  HyAsP_incomplete_genomes
drwxr-xr-x 1 jhuang jhuang 4,0K Apr 25  2020  HyAsP_normal_sampled_input
drwxr-xr-x 1 jhuang jhuang 8,0K Apr 28  2020  HyAsP_complete_genomes
-rwxr-xr-x 1 jhuang jhuang 176M Mai  8  2020  video.zip
-rwxr-xr-x 1 jhuang jhuang 6,9K Jun  2  2020  sam2bedgff.pl
-rwxr-xr-x 1 jhuang jhuang 5,5K Jul  7  2020  HD04.infection.hS_vs_HD04.nose.hS_annotated_degenes.xls
drwxr-xr-x 1 jhuang jhuang  44K Jul  9  2020  ALL83
drwxr-xr-x 1 jhuang jhuang  20K Jul  9  2020  Data_Pietschmann_RSV_Probe_PUBLISHED
drwxr-xr-x 1 jhuang jhuang 8,0K Jul 27  2020  HyAsP_normal
drwxr-xr-x 1 jhuang jhuang 4,0K Jul 28  2020  Data_Manthey_16S
drwxr-xr-x 1 jhuang jhuang 8,0K Jul 29  2020  rtpd_files_DEL
drwxr-xr-x 1 jhuang jhuang  20K Aug 11  2020  HyAsP_bold
drwxr-xr-x 1 jhuang jhuang  44K Aug 17  2020  Data_HEV
drwxr-xr-x 1 jhuang jhuang 4,0K Sep 29  2020  Seq_VRE_hybridassembly
drwxr-xr-x 1 jhuang jhuang  12K Nov 11  2020  Data_Anna12_HAPDICS_raw_data_shovill_prokka
drwxr-xr-x 1 jhuang jhuang  12K Aug 10  2021  Data_Anna_HAPDICS_WGS_ALL
drwxr-xr-x 1 jhuang jhuang  20K Aug 10  2021  Data_HEV_Freiburg_2020
drwxr-xr-x 1 jhuang jhuang  20K Okt 27  2021  Data_Nicole_HDV_Recombination_PUBLISHED
-rwxr-xr-x 1 jhuang jhuang 905K Feb  8  2022  s_hero2x
-rwxr-xr-x 1 jhuang jhuang 5,5G Feb 25  2022  201030_M03701_0207_000000000-J57B4.zip
-rwxr-xr-x 1 jhuang jhuang 4,9K Mär 21  2022  README
-rwxr-xr-x 1 jhuang jhuang 4,9K Mär 21  2022 'README(1)'
-rwxr-xr-x 1 jhuang jhuang  848 Mär 28  2022  dna2.fasta.fai
-rwxr-xr-x 1 jhuang jhuang  17K Mär 28  2022  91.pep
-rwxr-xr-x 1 jhuang jhuang 9,1K Mär 28  2022  91.orf
-rwxr-xr-x 1 jhuang jhuang  222 Mär 28  2022  91.orf.fai
-rwxr-xr-x 1 jhuang jhuang 1,1M Mär 31  2022  dgaston-dec-06-2012-121211124858-phpapp01.pdf
-rwxr-xr-x 1 jhuang jhuang 5,2K Apr  4  2022  tileshop.fcgi
-rwxr-xr-x 1 jhuang jhuang 765K Apr  4  2022  ppat.1009304.s016.tif
-rwxr-xr-x 1 jhuang jhuang 4,1K Mai  2  2022  sequence.txt
-rwxr-xr-x 1 jhuang jhuang 4,0K Mai  2  2022 'sequence(1).txt'
-rwxr-xr-x 1 jhuang jhuang 3,7K Mai 23  2022  GSE128169_series_matrix.txt.gz
-rwxr-xr-x 1 jhuang jhuang 4,0K Mai 23  2022  GSE128169_family.soft.gz
drwxr-xr-x 1 jhuang jhuang  40K Mär 20  2023  Data_Anna_HAPDICS_RNASeq
drwxr-xr-x 1 jhuang jhuang 1,3M Apr  4  2023  Data_Christopher_MeDIP_MMc_PUBLISHED
drwxr-xr-x 1 jhuang jhuang 8,0K Jun 28  2023  Data_Gunnar_Yersiniomics_IMCOMPLETE_DEL
drwxr-xr-x 1 jhuang jhuang  28K Feb 12  2024  Data_Denise_RNASeq
drwxr-xr-x 1 jhuang jhuang 4,0K Apr  5  2024 'System Volume Information'
drwxr-xr-x 1 jhuang jhuang    0 Apr  5  2024 '$RECYCLE.BIN'

jhuang@WS-2290C:/media/jhuang/Elements(An14_RNAs)$ ls -tlrh
total 284K
drwxr-xr-x 1 jhuang jhuang 8,0K Aug  7  2017  Data_Anna10_RP62A
drwxr-xr-x 1 jhuang jhuang 4,0K Jun 15  2018  Data_Nicole12_16S_Kluwe_Bunders
drwxr-xr-x 1 jhuang jhuang 4,0K Nov 30  2018  chromhmm-enhancers
drwxr-xr-x 1 jhuang jhuang    0 Apr  1  2019  Data_Denise_sT_Methylation
drwxr-xr-x 1 jhuang jhuang    0 Apr  1  2019  Data_Denise_LTtrunc_Methylation
drwxr-xr-x 1 jhuang jhuang  12K Apr 29  2019  Data_16S_arckNov
drwxr-xr-x 1 jhuang jhuang 4,0K Mai 29  2019  Data_Tabea_RNASeq
-rwxr-xr-x 1 jhuang jhuang 4,6K Mai 29  2019  nr_gz_README
drwxr-xr-x 1 jhuang jhuang 4,0K Jun  5  2019  j_huang_raw_fq
drwxr-xr-x 1 jhuang jhuang    0 Jun  7  2019 'System Volume Information'
drwxr-xr-x 1 jhuang jhuang    0 Jun  7  2019 '$RECYCLE.BIN'
drwxr-xr-x 1 jhuang jhuang  36K Jun 18  2019  host_refs
drwxr-xr-x 1 jhuang jhuang    0 Jun 18  2019  Vraw
drwxr-xr-x 1 jhuang jhuang  68K Jul 29  2019  Data_Susanne_Amplicon_RdRp_orf1_2 *
drwxr-xr-x 1 jhuang jhuang 4,0K Aug  6  2019  tmp
drwxr-xr-x 1 jhuang jhuang  28K Sep  4  2020  Data_RNA188_Paul_Becher
drwxr-xr-x 1 jhuang jhuang 4,0K Nov  3  2020  Data_ChIPSeq_Laura
drwxr-xr-x 1 jhuang jhuang  12K Mai  7  2021  Data_16S_arckNov_review_PUBLISHED
drwxr-xr-x 1 jhuang jhuang 8,0K Mai  7  2021  Data_16S_arckNov_re
drwxr-xr-x 1 jhuang jhuang  20K Mai 25  2021  Fastqs
drwxr-xr-x 1 jhuang jhuang 4,0K Aug  9  2021  Data_Tabea_RNASeq_submission
drwxr-xr-x 1 jhuang jhuang 4,0K Aug 27  2021  Data_Anna_Cutibacterium_acnes_DEL
drwxr-xr-x 1 jhuang jhuang    0 Sep 16  2021  Data_Silvia_RNASeq_SUBMISSION
drwxr-xr-x 1 jhuang jhuang 4,0K Feb  9  2022  Data_Hannes_ChIPSeq
drwxr-xr-x 1 jhuang jhuang 4,0K Jul  5  2022  Data_Anna14_RNASeq_to_be_DEL
drwxr-xr-x 1 jhuang jhuang  40K Dez 15  2022  Data_Pietschmann_RSV_Probe2_PUBLISHED
drwxr-xr-x 1 jhuang jhuang    0 Dez 16  2022  Data_Holger_Klebsiella_pneumoniae_SNP_PUBLISHING
drwxr-xr-x 1 jhuang jhuang 4,0K Jun 29  2023  Data_Anna14_RNASeq_plus_public

jhuang@WS-2290C:/media/jhuang/Elements(Indra_HAPDICS)$ ls -trlh
total 452K
drwxrwxrwx 1 jhuang jhuang  20K Jul  3  2018  Data_Anna11_Sepdermidis_DEL
drwxrwxrwx 1 jhuang jhuang  20K Jul 12  2018  HD15_without_10
drwxrwxrwx 1 jhuang jhuang  12K Jul 12  2018  HD31
drwxrwxrwx 1 jhuang jhuang  20K Jul 12  2018  HD33
drwxrwxrwx 1 jhuang jhuang  20K Jul 12  2018  HD39
drwxrwxrwx 1 jhuang jhuang  20K Jul 12  2018  HD43
drwxrwxrwx 1 jhuang jhuang  20K Jul 12  2018  HD46
drwxrwxrwx 1 jhuang jhuang  20K Jul 12  2018  HD15_with_10
drwxrwxrwx 1 jhuang jhuang  12K Jul 13  2018  HD26
drwxrwxrwx 1 jhuang jhuang  20K Jul 13  2018  HD59
drwxrwxrwx 1 jhuang jhuang  12K Jul 13  2018  HD25
drwxrwxrwx 1 jhuang jhuang  20K Jul 16  2018  HD21
drwxrwxrwx 1 jhuang jhuang  20K Jul 17  2018  HD17
drwxrwxrwx 1 jhuang jhuang  24K Sep 24  2018  HD04
drwxrwxrwx 1 jhuang jhuang  20K Mär  5  2019  Data_Anna11_Pair1-6_P6
drwxrwxrwx 1 jhuang jhuang 4,0K Aug 15  2019  Data_Anna12_HAPDICS_HyAsP
drwxrwxrwx 1 jhuang jhuang  68K Dez 27  2019  HAPDICS_hyasp_plasmids
drwxrwxrwx 1 jhuang jhuang 8,0K Jan 14  2021  Data_Anna_HAPDICS_review
-rwxrwxrwx 1 jhuang jhuang 9,6K Jan 26  2021  data_overview.txt
drwxrwxrwx 1 jhuang jhuang 4,0K Jan 29  2021  align_assem_res_DEL
drwxrwxrwx 1 jhuang jhuang    0 Jun  8  2021 'System Volume Information'
drwxrwxrwx 1 jhuang jhuang 4,0K Jun  8  2021  EXCHANGE_DEL
drwxrwxrwx 1 jhuang jhuang 8,0K Aug 30  2021  Data_Indra_H3K4me3_public
drwxrwxrwx 1 jhuang jhuang 4,0K Feb 17  2022  Data_Gunnar_MS
drwxrwxrwx 1 jhuang jhuang 4,0K Jun  2  2022 '$RECYCLE.BIN'
drwxrwxrwx 1 jhuang jhuang 4,0K Jun  2  2022  UKE_DELLWorkstation_C_Users_indbe_Desktop
drwxrwxrwx 1 jhuang jhuang 4,0K Jun  2  2022  Linux_DELLWorkstation_C_Users_indbe_VirtualBoxVMs
drwxrwxrwx 1 jhuang jhuang 4,0K Jun 23  2022  Data_Anna_HAPDICS_RNASeq_rawdata
drwxrwxrwx 1 jhuang jhuang 8,0K Jun 23  2022  Data_Indra_H3K27ac_public
drwxrwxrwx 1 jhuang jhuang  28K Feb 22  2023  Data_Holger_Klebsiella_pneumoniae_SNP_PUBLISHING
drwxrwxrwx 1 jhuang jhuang 4,0K Dez  9  2024  DATA_INDRA_RNASEQ
drwxrwxrwx 1 jhuang jhuang 4,0K Dez  9  2024  DATA_INDRA_CHIPSEQ

jhuang@WS-2290C:/media/jhuang/Elements(jhuang_*)$ ls -ltrh
total 5,0M
-rwxr-xr-x  1 jhuang jhuang 657K Jul  9  2021 'Install Western Digital Software for Windows.exe'
-rwxr-xr-x  1 jhuang jhuang 498K Jul  9  2021 'Install Western Digital Software for Mac.dmg'
drwxr-xr-x  2 jhuang jhuang 1,0M Mai 17  2023 'System Volume Information'
drwxr-xr-x  2 jhuang jhuang 1,0M Aug 26  2024 '$RECYCLE.BIN'
drwxr-xr-x 11 jhuang jhuang 1,0M Feb  4  2025  20250203_FS10003086_95_BTR67811-0621

jhuang@WS-2290C:/media/jhuang/Smarty$ ls -tlrh
total 140K
drwx------  2 jhuang jhuang  16K Mär 14  2018 lost+found
drwxrwxrwx 21 jhuang jhuang  68K Jun 10  2022 Blast_db
drwxrwxr-x  2 jhuang jhuang 4,0K Sep  5  2022 temporary_files_DEL
drwxrwxr-x  9 jhuang jhuang  12K Sep  6  2022 ALIGN_ASSEM
drwxr-xr-x 19 jhuang jhuang 4,0K Sep 29  2022 Data_Paul_Staphylococcus_epidermidis
drwxrwxr-x 11 jhuang jhuang 4,0K Jan 26  2023 Data_16S_Degenhardt_Marius_DEL
drwxrwxr-x 16 jhuang jhuang 4,0K Jun 28  2023 Data_Gunnar_Yersiniomics_DEL
drwxrwxr-x  6 jhuang jhuang 4,0K Jul  5  2023 Data_Manja_RNAseq_Organoids_Virus
drwxrwxr-x 19 jhuang jhuang  12K Sep 27  2023 Data_Emilia_MeDIP
drwxr-xr-x 14 jhuang jhuang 4,0K Okt 30  2023 DjangoApp_Backup_2023-10-30
drwxrwxr-x  5 jhuang jhuang 4,0K Apr 19  2024 ref
drwxrwxr-x  4 jhuang jhuang 4,0K Jul 22  2025 Data_Michelle_RNAseq_2025_raw_data_DEL_AFTER_UPLOAD_GEO

按研究方向速查：生命科学常用数据库清单（Global Core Biodata Resources 精选）

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下面是一份“按研究方向推荐常用数据库”的速查清单。按你做什么研究 → 该先去哪几个库来分组，每个库后面给一句“用来干嘛”。In summary, 做基因组先看 ENA/Ensembl/UCSC；做蛋白功能先上 UniProt/InterPro；做通路用 Reactome；做药物与小分子用 ChEMBL/ChEBI；做人类变异用 gnomAD/GWAS Catalog/ClinGen；做微生物命名和 16S 用 LPSN/SILVA；做模型生物就去 FlyBase/WormBase/ZFIN/MGD。

基因组学与序列数据

  • European Nucleotide Archive（ENA）：原始测序数据、组装、注释的综合归档入口（欧洲体系）。
  • DNA Data Bank of Japan（DDBJ）：日本序列数据归档（INSDC 成员之一）。
  • Ensembl：脊椎动物基因组浏览、比较基因组、变异、调控注释。
  • UCSC Genome Browser：人类及多物种基因组可视化浏览与注释轨道。
  • GENCODE：人/鼠高质量基因注释集合（常做标准参考）。

微生物/细菌方向（菌株信息、命名、16S 等）

  • BacDive：菌株层面的标准化信息（培养条件、表型、来源等）。
  • LPSN: List of Prokaryotic names with Standing in Nomenclature：原核命名权威信息（名称是否有效、分类更新）。
  • SILVA：16S/18S、23S/28S rRNA 序列与比对数据集（做分类/扩增子常用）。

蛋白质功能注释、家族结构域、互作网络

  • UniProt：蛋白序列与功能注释的“总入口”（最常用）。
  • InterPro：蛋白家族/结构域/功能位点整合分析（做注释和功能预测）。
  • CATH：蛋白结构域进化关系/结构分类。
  • STRING：蛋白互作网络（预测+整合证据），做功能关联很方便。
  • IMEx: International Molecular Exchange Consortium：高质量、人工整理的分子互作数据整合。
  • Protein Data Bank（PDB）：蛋白/核酸 3D 结构的全球档案库（结构生物学必备）。

通路、代谢与反应数据库

  • Reactome：经典通路知识库（富集分析、机制解释常用）。
  • Rhea：生化反应与转运反应标准化知识库（注释/代谢研究）。
  • BRENDA：酶功能数据大全（底物、动力学、反应等）。
  • EcoCyc：大肠杆菌 K-12 的基因组与代谢通路精细注释库。

化学、小分子、药物靶点（药物研发/化学生物学）

  • ChEBI：小分子化学实体词典/本体（标准名、结构、分类）。
  • ChEMBL：药物样分子、活性、靶点关联（做药物发现/重定位很常用）。
  • IUPHAR/BPS Guide to PHARMACOLOGY：权威药理学知识库（配体-靶点关系、药物信息）。
  • LIPID MAPS：脂质组学资源与命名/分类体系。

转录组、表达谱、蛋白表达图谱

  • Bgee：跨物种表达模式对比（“这个基因在哪里表达？”）。
  • GXD：小鼠基因表达数据库（发育/组织表达等）。
  • Human Protein Atlas：人类组织/细胞层面的蛋白表达与定位图谱。
  • Europe PMC：生命科学文献入口（全文/摘要、资助信息等，做调研很高效）。

人类遗传变异、GWAS、疾病本体与临床解释

  • gnomAD：人群变异频率汇总（过滤“常见变异”必备）。
  • GWAS Catalog：GWAS SNP-性状关联的标准化数据库。
  • Clinical Genome Resource（ClinGen）：基因/变异的临床相关性评估资源（精准医学）。
  • CIViC: Clinical Interpretation of Variants in Cancer：肿瘤变异临床意义的社区整理平台。
  • Human Disease Ontology Knowledgebase：疾病本体（统一术语、做整合分析很有用）。
  • ClinPGX：药物基因组学知识整理（基因变异影响用药反应）。

模型生物与专属物种数据库

  • FlyBase：果蝇遗传与分子数据。
  • WormBase：秀丽线虫及相关线虫的基因组与生物学数据。
  • ZFIN: The Zebrafish Information Network：斑马鱼模型数据。
  • MGD: Mouse Genome Database：小鼠基因组与表型/疾病关联数据。
  • PomBase：裂殖酵母资源库。
  • Saccharomyces Genome Database：出芽酵母数据库。
  • Rat Genome Database：大鼠基因组与表型/疾病数据。
  • Alliance of Genome Resources：多模型生物资源的整合入口（跨物种对照很方便）。

生物多样性、物种名录与分类学

  • Catalogue of Life：全球已知物种的统一名录与分类信息。
  • Global Biodiversity Information Facility（GBIF）：全球生物多样性观测/标本记录等开放数据平台。

病原体与媒介（寄生虫/媒介昆虫等）

  • VEuPathDB：真核病原体及无脊椎媒介相关的大规模组学数据库集合。