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Author: gene_x
Abstract: 1. goal #p604 and p601 to sT transcript #p602 and p600 to LT transcript #p605 and p600 to LTtr transcript (or LT transcript is also fine) p602+604 compared to sT tran
Author: gene_x
Abstract: 1. prepare input reads and samplesheet ln -s ./F23A430001245_SEPiovzP/soapnuke/clean/EX_15_min_A/EX_15_min_A_1.fq.gz . ln -s ./F23A430001245_SEPiovzP/soapnuke/clean/EX_15_min_A/EX_15_
Author: gene_x
Abstract: >TODO: after annotation check if the app-gene has been truncated in 5179-R1. The 5179 generates 180 kDa and 220 kDa (isoforms) while 5179-R1 generated only a 140 kDa protein. # See the paper: Ind
Author: gene_x
Abstract: Cell free circulating DNA (cfDNA) refers to DNA fragments present outside of cells in body fluids such as plasma, urine, and cerebrospinal fluid (CSF). CfDNA was first identified in 1948 from plasma o
Author: gene_x
Abstract: 0. prapare the input sequencing data NGS.id Sample.name ONT_barcode jk3332 5179R1 Native Barcode NB01 jk3333 1585 Native Barcode NB02 jk3334 1585V Native Barco
Author: gene_x
Abstract: Random Forest is a machine learning model that falls under the category of ensemble learning methods. It is particularly known for classification and regression tasks but can also be used for other ma
Author: gene_x
Abstract: The terms "EV" and "outer membrane vesicle (OMV)" are related to biological structures, particularly in the context of bacterial or cell biology. They refer to different types of vesicles or membrane-
Author: gene_x
Abstract: #Questions about V3–V4 primers for 16S rRNA amplicon sequencing, and calculating overlap https://forum.qiime2.org/t/questions-about-v3-v4-primers-for-16s-rrna-amplicon-sequencing-and-calculati
Author: gene_x
Abstract: > https://www.virologie.uni-wuerzburg.de/virologie/ags-virologie/ag-doelken/research/ 1. Principle of 4sU-tagging: 4-thiouridine (4sU) is added to cell culture medium to start metabolic labelling of
Author: gene_x
Abstract: A "lytic nuclear DNA virus infection" refers to a type of viral infection where a DNA virus enters a host cell, replicates in the nucleus, and eventually causes the lysis (destruction) of the cell. He
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