Titisee

• ‘$RECYCLE.BIN’
• 180119_M03701_0115_000000000-BFG46.zip
• 3rd_party
• Anna11_assemblies
• Anna11_trees
• bengal_results_v1_2018
• ConsPred_prokaryotic_genome_annotation
• damian_DEL
• damian_v201016
• Data_Amir_PUBLISHED (*)
• Data_Anastasia_RNASeq
• Data_Anna4_SNP
• Data_Anna5_SNP_rsync_error
• Data_Anna9_OXA-48_or_OXA-181
• Data_Francesco_16S
• Data_Holger_Pseudomonas_aeruginosa_SNP
• Data_Holger_S.epidermidis_long
• Data_Holger_S.epidermidis_short
• Data_Holger_VRE
• Data_Marc_RNA-seq_Sepidermidis
• Data_Nico_Gagliani
• Data_Nicola_Schaltenberg
• Data_Nicola_Schaltenberg_PICRUSt
• Data_Nicole10_16S_interlab_PUBLISHED (*)
• Data_Nicole6_HEV_4_SNP_calling_PE_DEL
• Data_Nicole6_HEV_4_SNP_calling_SE_DEL
• Data_Nicole6_HEV_new_orig_fastqs
• Data_Nicole6_HEV_Swantje
• Data_Nina1_Nicole7
• Data_Tam_Acinetobacter_baumannii
• Data_Ute_MKL1
• Data_Ute_RNA_1_2
• Data_Ute_RNA_4
• Data_Ute_RNA_4_2022-11_test
• DO.pdf
• Eigene_Ordner_HR
• GAMOLA2
• GAMOLA2_prototyp
• HOME_FREIBURG
• MAGpy_db
• ‘System Volume Information’
• Thomas_methylation_EPIC_DO
• TRASH
• UGENE_v1_32_data_cistrome
• UGENE_v1_32_data_ngs_classification

Denise_ChIPseq

• ‘$RECYCLE.BIN’
• ALL_trimmed_part_DEL
• coi_disclosure.docx
• Data_Amir_PUBLISHED_DEL
• Data_Anna12_HAPDICS_final_not_finished_DEL
• Data_Anna_Mixta_hanseatica_PUBLISHED (*)
• Data_Arck_16S_MMc_PUBLISHED (*)
• Data_Caroline_RNAseq_brain_organoids
• Data_Caroline_RNAseq_wt_timecourse
• Data_Damian
• Data_Denise_ChIPSeq_Protocol1
• Data_Denise_ChIPSeq_Protocol2
• Data_Denise_LTtrunc_H3K27me3_2_results_DEL
• Data_Denise_LTtrunc_H3K4me3_2_results_DEL
• Data_download_virus_fam
• Data_Gunnar_Yersiniomics_COPYFAILED_DEL
• Data_HepE_Freiburg_PUBLISHED (*)
• Data_INTENSO_2022-06
• Data_Jingang
• Data_Laura_ChIPseq_GSE120945
• Data_Nicole6_HEV_ownMethod
• Data_Nicole6_HEV_ownMethod_new
• Data_Paul_and_Marc_Epidome_batch3
• Data_Pietschmann_HCV_Amplicon
• Data_Soeren_RNA-seq_2023_PUBLISHING (*)
• Data_Susanne_16S_re_UNPUBLISHED
• Data_Susanne_16S_UNPUBLISHED
• Data_Svenja_RSV_Probe3_PUBLISHING (*)
• Data_Ute
• HD04-1.fasta
• m_aepfelbacher_DEL
• RNAHiSwitch
• RNAHiSwitch_
• RNAHiSwitch__
• RNAHiSwitch___
• RNAHiSwitch_milestone1
• RNAHiSwitch_milestone1_DELETED
• RNAHiSwitch_paper
• RNAHiSwitchpaper
• RNAHiSwitch_paper_DELETED
• RNAHiSwitch_paper.tar.gz
• ST772_DEL
• ‘System Volume Information’
• Ute_miRNA_results_38
• Ute_RNASeq_results

Elements1 (An14_RNAs)

• ‘$RECYCLE.BIN’
• chromhmm-enhancers
• Data_16S_arckNov
• Data_16S_arckNov_re
• Data_16S_arckNov_review_PUBLISHED (*)
• Data_Anna10_RP62A
• Data_Anna14_RNASeq_plus_public (#)
• Data_Anna14_RNASeq_to_be_DEL
• Data_Anna_Cutibacterium_acnes_DEL
• Data_ChIPSeq_Laura
• Data_Denise_LTtrunc_Methylation
• Data_Denise_sT_Methylation
• Data_Hannes_ChIPSeq
• Data_Holger_Klebsiella_pneumoniae_SNP_PUBLISHING (*)
• Data_Kieler_Sepi_Staemme
• Data_Nicole12_16S_Kluwe_Bunders
• Data_Pietschmann_RSV_Probe2_PUBLISHED (*)
• Data_RNA188_Paul_Becher
• Data_Silvia_RNASeq_SUBMISSION
• Data_Susanne_Amplicon_RdRp_orf1_2
• Data_Tabea_RNASeq
• Data_Tabea_RNASeq_submission
• Fastqs
• host_refs
• j_huang_raw_fq
• nr_gz_README
• ‘System Volume Information’
• tmp
• Vraw

Elements (Anna C.arnes)

• ‘$RECYCLE.BIN’
• ChIPSeq_pipeline_desc.docx
• ChIPSeq_pipeline_desc.fodt
• ChIPSeq_pipeline_desc.pdf
• Data_16S_Leonie_from_Nico_Gaglianis
• Data_Anna_C.acnes_PUBLISHED (*#)
• Data_Denise_LT_DNA_Bindung
• Data_Denise_LT_K331A_RNASeq
• Data_Denise_RNASeq_GSE79958
• Data_Luise_Epidome_batch1
• Data_Luise_Epidome_batch2
• Data_Luise_Epidome_test
• Data_Luise_Pseudomonas_aeruginosa_PUBLISHED (*)
• Data_Nicole6_HEV_benchmark
• Data_Nicole6_HEV_Swantje1_blood
• Data_Susanne_spatialRNA_2022.9.1_backup
• Data_Swantje_HEV_using_viral-ngs
• Data_Tam_RNASeq3
• Fastqs_19-21
• picrust2_out_2024_2
• RNASeq_pipeline_desc.docx
• RNASeq_pipeline_desc.pdf
• ‘System Volume Information’
• VIPER_static_DEL

Elements (j_huang_until_201904)

• ‘$RECYCLE.BIN’
• bacteria_refseq
• bacteria_refseq.zip
• Data_2019_April
• Data_2019_August
• Data_2019_July
• Data_2019_June
• Data_2019_May
• Data_2019_September
• Data_Becher_Damian_Picornavirus_BovHepV
• Data_Laura_MP_RNASeq
• Data_Nicole6_HEV_Swantje2
• Data_Rotavirus
• Data_Rotavirus_DEL
• Data_Song_RNASeq_PUBLISHED (*)
• Data_Xiaobo_10x
• ‘Install Western Digital Software for Mac.dmg’
• ‘Install Western Digital Software for Windows.exe’
• j_huang_until_201904 (#)
• sage_jhuang_DEL
• ‘System Volume Information’

Elements (Indra HAPDICS)

• ‘$RECYCLE.BIN’
• align_assem_res_DEL
• Data_Anna11_Pair1-6_P6
• Data_Anna11_Sepdermidis_DEL
• Data_Anna12_HAPDICS_HyAsP (#)
• Data_Anna_HAPDICS_review (#)
• Data_Anna_HAPDICS_RNASeq_rawdata (#)
• Data_Gunnar_MS
• Data_Holger_Klebsiella_pneumoniae_SNP_PUBLISHING (*)
• Data_Indra0_pioneer (#)
• Data_Indra10_K9me3S10ph_r2 (#)
• Data_Indra2_RNASeq (#)
• Data_Indra3_H3K4me3 (#)
• Data_Indra3_H3K4me3_incomplete_DEL (#)
• Data_Indra4_H3K27me3 (#)
• Data_Indra5_H3K27ac (#)
• Data_Indra7_H3K4me1 (#)
• Data_Indra8_H3K4me3 (#)
• Data_Indra9_K9me3S10ph_r1 (#)
• Data_Indra_H3K27ac_public (#)
• Data_Indra_H3K4me3_public (#)
• Data_Indra_RNASeq_GSM2262901 (#)
• Data_Indra_TypeI_IFNs_and_TNF (#)
• Data_Laura1_Indra2_RNASeq (#)
• Data_Marie_Indra_H3S10 (#)
• data_overview.txt
• EXCHANGE_DEL
• HAPDICS_hyasp_plasmids (#)
• HD04 (#)
• HD15_with_10 (#)
• HD15_without_10 (#)
• HD17 (#)
• HD21 (#)
• HD25 (#)
• HD26 (#)
• HD31 (#)
• HD33 (#)
• HD39 (#)
• HD43 (#)
• HD46 (#)
• HD59 (#)
• Linux_DELLWorkstation_C_Users_indbe_VirtualBoxVMs
• m_aepfelbacher
• m_aepfelbacher.zip
• ‘System Volume Information’
• UKE_DELLWorkstation_C_Users_indbe_Desktop

Seagate 1

• ‘$RECYCLE.BIN’
• 2017-18_raw_data
• batch_200314_incomplete
• batch_200319
• batch_200325
• ChromHMM_Dir
• chromhmm-enhancers
• Data_Anna12_HAPDICS_final
• Data_Arck_MeDIP
• Data_Denise_ChIPSeq_Protocol1
• Data_Denise_sT_H3K27me3
• Data_Denise_sT_H3K4me3
• Data_ENNGS_pathogen_detection_pipeline_comparison
• Data_Laura0
• Data_Laura_16S
• Data_Laura_16S_2
• Data_Laura_16S_2_re
• Data_Laura_16S_2re
• Data_Laura_16S_merged
• Data_Laura_ChIPseq_GSE120945
• Data_Laura_plasmid
• Data_Martin_mycoplasma
• Data_Nicola_Gagliani
• Data_Nicole16_parapoxvirus
• Data_Nicole_16S_Christmas_2020
• Data_Nicole_16S_Christmas_2020_2
• Data_Petra_Arck
• Downloads_2021-01-18_DEL
• Downloads_DEL
• GAMOLA2_prototyp
• j_huang_201904_202002
• j_huang_202007_202012
• m_aepfelbacher.zip
• m_error_DEL
• Project_h_rohde_Susanne_WGS_unbiased_DEL.zip
• RNA_seq_analysis_tools_2013
• Seagate
• Start_Here_Mac.app
• ‘System Volume Information’
• trimmed

Seagate 2

• ‘$RECYCLE.BIN’
• 201030_M03701_0207_000000000-J57B4.zip
• 91.orf
• 91.orf.fai
• 91.pep
• ALL
• ALL83
• Autorun.inf
• Data_Anna12_HAPDICS_raw_data_shovill_prokka
• Data_Anna_HAPDICS_RNASeq
• Data_Anna_HAPDICS_WGS_ALL
• Data_Christopher_MeDIP_MMc_PUBLISHED (*)
• Data_Denise_RNASeq
• Data_Denise_RNASeq_trimmed_DEL
• Data_Gunnar_Yersiniomics_IMCOMPLETE_DEL
• Data_HEV
• Data_HEV_Freiburg_2020
• Data_Manthey_16S
• Data_Nicole_16S_Hamburg_Odense_Cornell_Muenster
• Data_Nicole4_TH17
• Data_Nicole_HDV_Recombination_PUBLISHED (*)
• Data_Pietschmann_RSV_Probe_PUBLISHED (*)
• Data_Susanne_Carotis_RNASeq_PUBLISHING (*)
• dgaston-dec-06-2012-121211124858-phpapp01.pdf
• dna2.fasta.fai
• f1_R1_link.sh
• f1_R2_link.sh
• fastq_HPI_bw_2019_08_and_2020_02
• GSE128169_family.soft.gz
• GSE128169_series_matrix.txt.gz
• HD04.infection.hS_vs_HD04.nose.hS_annotated_degenes.xls
• HD12
• HyAsP_bold
• HyAsP_complete_genomes
• HyAsP_incomplete_genomes
• HyAsP_normal
• HyAsP_normal_sampled_input
• m_aepfelbacher.zip
• ppat.1009304.s016.tif
• Qi_panGenome
• README
• ‘README(1)’
• rtpd_files
• rtpd_files_DEL
• sam2bedgff.pl
• Seagate
• ‘sequence(1).txt’
• sequence.txt
• Seq_VRE_hybridassembly
• s_hero2x
• Start_Here_Mac.app
• Start_Here_Win.exe
• ‘System Volume Information’
• tileshop.fcgi
• video.zip
• Warranty.pdf

Seagate 3 (/home/jhuang backup DATA_COPY_FROM_hamburg)

• Autorun.inf
• DATA_COPY_DEL
• DATA_COPY_FROM_hamburg
• Seagate
• Start_Here_Mac.app
• Start_Here_Win.exe
• Warranty.pdf

Seagate 4 (ERROR)

Smarty

• ALIGN_ASSEM
• Blast_db
• Data_16S_Degenhardt_Marius_DEL
• Data_Emilia_MeDIP
• Data_Gunnar_Yersiniomics_DEL
• Data_Manja_RNAseq_Organoids_Virus
• Data_Paul_Staphylococcus_epidermidis
• Data_Susanne_spatialRNA
• Data_Ute_RNA_3
• DjangoApp_Backup_2023-10-30
• lost+found
• ref
• temporary_files_DEL

Volume (466G)

• Data_Indra3_H3K4me3_results_picard
• Data_Indra4_H3K27me3_results_picard
• Data_Indra5_H3K27ac_results_picard
• finding_gap_files_2023
• HOME_FREIBURG
• ls: cannot access ‘results_H3K27ac’: Input/output error

DATA_Intenso

• 150810_M03701_0019_000000000-AFJFK
• chipseq
• ChipSeq_Raw_Data3_171009_NB501882_0024_AHNGTYBGX3
• CLC_Data
• DATA (empty? if yes, delete it!)
• Data_Anna1_1585_RNAseq
• Data_Anna2_CO6114
• Data_Anna3_VRE_Ausbruch
• Data_Anna4_SNP
• Data_Anna5_SNP
• Data_Anna6_RNASeq
• Data_Anna7_RNASeq_Cytoscape
• Data_Anna8_RNASeq_static_shake_deprecated
• Data_Carolin1_16S
• Data_Gagliani1_18S_16S
• Data_Gagliani2_enriched_16S
• Data_Laura
• Data_Laura_2
• Data_Laura_3
• Data_Nicole10_16S_interlab
• Data_Nicole1_Tropheryma_whipplei
• Data_Nicole3_TH17_orig
• Data_Nicole7_Anelloviruses_Polyomavirus
• Data_Nicole8_Lamprecht
• Data_Nicole9_Hund_Katze_Mega
• Data_Nina1_merged
• Data_Nina1_Nicole5_1-76
• Data_SPANDx1_Kpneumoniae_vs_Assembly1
• Data_Susanne_WGS_3amplicons
• Data_Thaiss1_Microarray
• Data_Thaiss2_Microarray
• Downloads
• Downloads2
• Downloads_DEL
• Fastqs
• galaxy_tools
• HOME_FREIBURG_DEL
• m_aepfelbacher
• m_aepfelbacher_DEL.zip
• MauveOutput
• mom-baby_com_cn
• PAPERS
• PENDRIVE_cont
• results_K27
• TB
• ‘VirtualBox VMs’
• VirtualBox_VMs
• ‘VirtualBox VMs2’
• ‘VirtualBox VMs2_DEL’
• ‘VirtualBox VMs_DEL’
• VirtualBox_VMs_DEL
• websites
• Work_Dir2
• Work_Dir2_SGE
• Work_Dir_dM_broad_mockinput
• Work_Dir_dP_broad_mockinput
• Work_Dir_mock_broad_mockinput
• Work_Dir_WAC_broad_mockinput
• Work_Dir_WAP_broad_mockinput

DATA

• Data_Biobakery
• Data_Damian
• Data_Jiline_Transposon
• Data_Jiline_Transposon2
• Data_Jiline_Yersinia_SNP
• Data_Luise_Sepi_STKN
• Data_Marius_16S
• Data_Nicole_CRC1648
• Data_Patricia_Sepi_5Samples
• Data_PaulBongarts_S.epidermidis_HDRNA
• Data_Susanne_MPox
• Data_Tam_ABAYE_RS05070_on_A_calcoaceticus_baumannii_complex_DUPLICATED_DEL
• Data_Xiaobo_10x_2
• Data_Xiaobo_10x_3
• Mouse_HS3ST1_12175_out
• Mouse_HS3ST1_12373_out
• Talk_Nicole_CRC1648
• Talks_Bioinformatics_Meeting
• Talks_including_DEEP-DV
• Talks_resources

DATA_A

• Data_Damian_NEW_CREATED
• Data_Nicole8_Lamprecht_new_PUBLISHED
• Data_R_bubbleplots
• Data_Samira_RNAseq
• Data_Ute_TRANSFERED_DEL
• Paper_Target_capture_sequencing_MHH_PUBLISHED

DATA_B

• Antraege_
• Data_16S_Nicole_210222
• Data_Adam_Influenza_A_virus
• Data_Anna_Efaecium_assembly
• Data_Bactopia
• Data_Ben_RNAseq
• Data_DAMIAN_endocarditis_encephalitis
• Data_Denise_sT_PUBLISHING
• Data_Django
• Data_Fran2_16S_func
• Data_Gunnar_Yersiniomics
• Data_Holger_5179-R1_vs_5179
• Data_Holger_MT880870_MT880872_Annotation
• Data_Holger_S.epidermidis_1585_5179_HD05
• Data_Johannes_PIV3
• Data_Luise_Epidome_longitudinal_nose
• Data_Manja_Hannes_Probedesign
• Data_Manja_RNAseq_Organoids
• Data_Manja_RNAseq_Organoids_Merged
• Data_Manja_RNAseq_Organoids_Virus
• Data_Marc_AD_PUBLISHING
• Data_Marc_RNA-seq_Saureus_Review
• Data_Nicole_16S
• Data_Nicole_cfDNA_pathogens
• Data_Ring_and_CSF_PegivirusC_DAMIAN
• Data_Soeren_RNA-seq_2022
• Data_Song_Microarray
• Data_Susanne_Carotis_MS
• Data_Susanne_Omnikron
• Data_Viro
• Doktorarbeit
• Poster_Rohde_20230724

DATA_C

• 16304905.fasta
• ’16S data manuscript_NF.docx’
• 180820_2_supp_4265595_sw6zjk.docx
• 180820_2_supp_4265596_sw6zjk.docx
• 1a_vs_3.csv
• 2014SawickaBBA.pdf
• 20160509Manuscript_NDM_OXA_mitKomm.doc
• 2022-10-27_IRI_manuscript_v03_JH.docx
• ‘20221129 Table mutations.docx’
• ‘2.05.01.05-A01 Urlaubsantrag-Shuting-beantragt.pdf’
• 220607_Agenda_monthly_meeting.pdf
• 230602_NB501882_0428_AHKG53BGXT.zip
• 362383173.rar
• 3932-Leber
• 562.9459.1.fa
• 562.9459.1_rc.fa
• ‘add. Figures Hamburg_UKE.pptx’
• align_4l_on_FJ705359
• align_4p_on_FJ705359
• all_gene_counts_with_annotation.xlsx
• All_indels_annotated_vHR.xlsx
• ‘Amplikon_indeces_Susanne +groups.xlsx’
• Amplikon_indeces_Susanne.xlsx
• app_flask.py
• ASA3P.pdf
• assembly
• Astrovirus.pdf
• Aufnahmeantrag_komplett_10_2022.pdf
• Bacterial_pipelines.txt
• bacto
• bam2fastq_mapping_again
• bengal3_ac3.yml
• bengal3ac3.yml
• bengal-bay-0.1.json
• Biopython
• BioPython
• call_shell_from_Ruby.png
• ChIPSeq_pipeline_desc.docx
• ChIPSeq_pipeline_desc.pdf
• chipster
• coefficients_csaw_vs_diffreps.xlsx
• COMMANDS
• Comparative_genomic_analysis_of_eight_novel_haloal.pdf
• COMPSRA_uke_DEL.jar
• ‘Copy of pool_b1_CGATGT_300.xlsx’
• CvO_Klassenliste_7_3.pdf
• damian_GUI
• damian_nodbs
• Data_16S_Arck_vaginal_stool
• Data_16S_benchmark
• Data_16S_benchmark2
• Data_16S_Birgit
• Data_16S_BS052
• Data_16S_Christner
• Data_16S_gcdh_BKV
• Data_16S_Leonie
• Data_16S_PatientA-G_CSF
• Data_16S_Schaltenberg
• Data_Alex1_Amplicon
• Data_Alex1_SNP
• Data_Analysis_for_Life_Science
• Data_Anastasia_RNASeq_PUBLISHING
• Data_Anna12_HAPDICS_final
• Data_Anna13_vanA-Element
• Data_Anna14_PACBIO_methylation
• Data_Anna_C.acnes2_old_DEL
• Data_Anna_gap_filling_agrC
• Data_Anna_Kieler_Sepi_Staemme
• Data_Anna_MT880872_update
• Data_Baechlein_Hepacivirus_2018
• Data_Bornavirus
• Data_Christine_cz19-178-rothirsch-bovines-hepacivirus
• Data_Christopher_MeDIP_MMc_published
• Data_ChristophFR_HepE_published
• Data_CSF
• Data_Daniela_adenovirus_WGS
• Data_Emilia_MeDIP
• Data_Emilia_MeDIP_DEL
• Data_Francesco2021_16S
• Data_Francesco2021_16S_re
• Data_Gunnar_MS
• Data_Hannes_ChIPSeq
• Data_Hannes_RNASeq
• Data_Holger_Efaecium_variants_PUBLISHED
• Data_Holger_Pseudomonas_aeruginosa_SNP
• Data_Holger_VRE
• Data_Holger_VRE_DEL
• Data_Icebear_Damian
• Data_Indra3_H3K4_p2_DEL
• Data_Indra6_RNASeq_ChipSeq_Integration_DEL
• Data_Indra_Figures
• Data_Indra_RNASeq_GSM2262901
• Data_Jingang
• Data_jupnote
• Data_KatjaGiersch_new_HDV
• Data_Manja_RPAChIPSeq_public
• Data_Manuel_WGS_Yersinia
• Data_Manuel_WGS_Yersinia2_DEL
• Data_Manuel_WGS_Yersinia_DEL
• Data_Marcus_tracrRNA_structures
• Data_Mausmaki_Damian
• Data_methylome_MMc
• Data_MHH_Encephalitits_DAMIAN
• Data_Nicola_Gagliani
• Data_Nicola_Schaltenberg
• Data_Nicola_Schaltenberg_PICRUSt
• Data_Nicole1_Tropheryma_whipplei
• Data_Nicole5
• Data_Nicole5_77-92
• Data_parainfluenza
• Data_PaulBecher_Rotavirus
• Data_Paul_Staphylococcus_epidermidis
• Data_Pietschmann_HCV_Amplicon_bigFile
• Data_Piscine_Orthoreovirus_3_in_Brown_Trout
• Data_Proteomics
• Data_R_courses
• Data_RNABioinformatics
• Data_RNAKinetics
• Data_SARS-CoV-2
• Data_SARS-CoV-2_Genome_Announcement_PUBLISHED
• Data_Seite
• Data_snakemake_recipe
• Data_Song_aggregate_sum
• Data_Susanne_Amplicon_haplotype_analyses_RdRp_orf1_2_re
• Data_Susanne_Amplicon_RdRp_orf1_2_re
• Data_Susanne_Carotis_spatialRNA_PUBLISHING
• Data_Susanne_WGS_unbiased
• Data_Tabea_RNASeq
• Data_temp
• Data_Thaiss1_Microarray_new
• Data_Tintelnot_16S
• Data_viGEN
• Data_Wuenee_Plots
• Data_Yang_Poster
• DEEP-DV
• DOKTORARBEIT
• empty.fasta
• enhancer-snakemake-demo
• exchange.txt
• exdata-data-NEI_data.zip
• Fran_16S_Exp8-17-21-27.txt
• GAMOLA2
• genes_wac6_wap6.xls
• Genomic_Data_Science
• go1.13.linux-amd64.tar.gz.1
• HEV_aligned.fasta
• hev_p2-p5.fa
• hg19_gene_annotations
• hg19.rmsk.bed
• Hotmail_to_Gmail
• HPI_DRIVE
• HPI_samples_for_NGS_29.09.22.xlsx
• Indra_Thesis_161020.pdf
• install_nginx_on_hamm
• INTENSO_DIR
• interlab_comparison_DEL
• Learn_UGENE
• LOG
• LOG_p954_stat
• ‘LT K331A.gbk’
• Manuscript_10_02_2021.docx
• Manuscript_Epigenetics_Macrophage_Yersinia
• Manuscript_RNAHiSwitch
• map_corrected_backup.txt
• MeDIP_Emilia_copy_DEL
• metadata-9563675-processed-ok.tsv
• Metagenomics_Tools_and_Insights.pdf
• Method_biopython
• ‘Miseq Amplikon LAuf April.xlsx’
• mkg_sprechstundenflyer_ver1b_dezember_2019.pdf
• MMcPaper
• multiqc_config.yaml
• my_flask
• Nachweis_Bakterien_Viren_im_Hochdurchsatz.pdf
• Nanopore.handouts.pdf
• NGS
• NGS.tar.gz
• Nicole8_Lamprecht_logs
• ‘Norovirus paper Susanne 191105.docx’
• Okazaki-Seq_Processing
• p11326_OMIKRON3398_corsurv.gb
• p11326_OMIKRON3398_corsurv.gb_converted.fna
• pangenome-snakemake-master.zip
• pangenome-snakemake_zhaoc1
• papers
• parseGenbank_reformat.py
• PhyloRNAalifold.pdf
• ‘phylo tree draft.pdf’
• pool_b1_CGATGT_300.zip
• pyflow-epilogos
• qiime_params_backup.txt
• qiime_params_s16_s18.txt
• qiime_params.txt
• Rawdata_Readme.pdf
• raw_data_rnaseq_Indra
• R_cats_package
• R_DataCamp
• README_R
• README_RNAHiSwitch_DEL
• results_description.html
• rnaalihishapes.tar.gz
• RNAConSLOptV1.2
• RNAConSLOptV1.2.tar.gz
• RNAHeliCes
• RNA_li_HeliCes
• RNAliHeliCes
• RNAliHeliCes_Relatedshapes_modified
• RNA-NGS_Analysis_modul3_NanoStringNorm
• RNA-NGS_Analysis_modul3_NanoStringNorm.zip
• rnaseq_length_bias.pdf
• roentgenpass.pdf
• R_refcard
• ‘RSV GFP5 including 3`UTR.docx’
• R_tutorials-master
• R_tutorials-master.zip
• salmon_tx2gene_chrHsv1.tsv
• salmon_tx2gene_GRCh38.tsv
• ‘sample IDs_Lamprecht.xlsx’
• SERVER
• SnakeChunks
• Snakefile_list
• snakePipes
• SNPs_on_pangenome.txt
• Source_Classification_Code.rds
• S_staphylococcus_annotated_diff_expr.xls
• SUB10826945_record_preview.txt
• summarySCC_PM25.rds
• Supplementary_Table_S3.xlsx
• test_raw_data_dnaseq
• test_raw_data_rnaseq
• to_Francesco
• tutorial-rnaseq.pdf
• ukepipe
• ukepipe_nf
• UniproUGENE_UserManual.pdf
• Untitled1.ipynb
• Untitled2.ipynb
• Untitled3.ipynb
• Untitled.ipynb
• untitled.py
• var_www_DjangoApp_mysite2_2023-05
• WAC6h_vs_WAP6h_down.txt
• WAC6h_vs_WAP6h_up.txt
• webapp.tar.gz
• x.log

DATA_D

• Books_DA_for_Life

• Data_Marc_RNA-seq_Sepidermidis -> /media/jhuang/Titisee/Data_Marc_RNA-seq_Sepidermidis

• Data_Patricia_Transposon

• Data_Paul_HD46_1-wt_resequencing

• Data_Pietschmann_Mutations

• Data_Samira_Manuscripts

• Data_Sanam_DAMIAN

• Data_Silvia_VoltRon_Debug

• Datasize_calculation_based_on_coverage.txt

• Data_Soeren_RNA-seq_2023_PUBLISHING -> /media/jhuang/Elements/Data_Soeren_RNA-seq_2023_PUBLISHING/

• Data_Sven

• Data_Svenja_RSV_Probe3_PUBLISHING -> /media/jhuang/Elements/Data_Svenja_RSV_Probe3_PUBLISHING

• Data_Tam_variant_calling

• Data_Ute -> /media/jhuang/Elements/Data_Ute/

• 126.3.1.1.2.010.02 (enp0s31f6: 10.169.63.124); 126.3.1.1.2.010.03 (eno2: 10.169.63.115); 126.2.1.1.2.010.04 (enp4s0: 10.169.63.113)