Author: gene_x

Abstract: 1. I used an strategy, at first annotate the contigs using the virus-speicific data and bacteria-speicific data, then using more general databases nt and nr. The results are as attached. For some samp

Author: gene_x

Abstract: Using spaceranger to process spatial transcriptomics data involves several steps, from preparing the necessary input files to running the analysis and interpreting the results. Below, I'll provide a c

Author: gene_x

Abstract: 1. Restricting User 'malawi' from Installing System-wide Programs and Verifying Permissions chmod o-rx /home/jhuang ls -ld /home/jhuang cd /home/jhuang groups malawi

Author: gene_x

Abstract: 1. nextflow processing data (chipseq) jhuang@hamm:/mnt/h1/jhuang/DATA/Data_Denise_LT_DNA_Binding/Histone-ChIP_hg38/H3K27ac_H3K4me1_public$ nextflow run NGI-ChIPseq/main.nf --reads '/mnt/h1/jh

Author: gene_x

Abstract: [](/static/sT_revision/PCA_3D.png "PCA_3D") [](/static/sT_revi

Author: gene_x

Abstract: kraken2 --db Minikraken2_v2 input_sequences.fasta --output output.kraken2 kraken2 --db=/home/jhuang/Tools/k2_standard_20230605 --output=A10_output.txt --report=A10_report.txt --paired ./results_ATCC1

Author: gene_x

Abstract: 1. input data #Deciphering Evolutionary Trajectories in Acinetobacter baumannii: A Comparative Study of Isolates ATCC 19606, AYE, and ATCC 17978 #PRJNA1041744

Author: gene_x

Abstract: 1. download viral database cp download_db.py down_db.py.backup sed -i -e 's/39733/1396/g' download_db.py #NOTE the download_db.py cannot run alone, rather than via "vrap.py -u

Author: gene_x

Abstract: 摘要 自现代转座子插入测序（TIS）方法引入以来已有10年的时间了。这些方法结合了全基因组转座子突变和高通量测序，用于估计细菌基因组中每个遗传组分的适应性贡献或必需性。2009年，发布了四种TIS变体：转座子测序（Tn-Seq）、转座子定向插入位点测序（TraDIS）、插入测序（INSeq）和高通量插入跟踪深度测序（HITS）。此后，TIS已成为分子微生物学家的重要工具之一，它是少数直接将表

Author: gene_x

Abstract: > https://fonseca.lab.mcgill.ca/resources/20220810_ATAC_Analysis_Demo/guide.html#peaks [](/static/peaks_