Author: gene_x

Abstract: Preparing a GTF file from GenBank for bacterial RNA-seq analysis, using the example of WA 1. In the example Yersinia enterocolitica strain WA #[IMPORTANT FINAL STEPS] [STEP1] genbank

Author: gene_x

Abstract: The terms "molecular biomarker" and "genomic biomarker" refer to specific types of biomarkers used in the field of biomedicine for diagnosis, prognosis, and monitoring the response to treatment, among

Author: gene_x

Abstract: BCR (B-cell receptor) sequencing and TCR (T-cell receptor) sequencing are molecular techniques used to analyze the genetic diversity of B-cell and T-cell receptors within an immune response. These rec

Author: gene_x

Abstract: > Original text please find under https://www.biorxiv.org/content/10.1101/2024.01.22.576744v1.full 1. The structural proteome of eukaryotic viruses /ˈproʊ.ti.oʊm/ (Fig. 1 + Supplementary Fig. 1) [![

Author: gene_x

Abstract: 1. In the example RP62A #[IMPORTANT FINAL STEPS] [1] python3 gff_to_gtf.py RP62A.gff3 RP62A.gtf or python3 ~/Scripts/genbank_to_gtf.py 1585.gb 1585.gtf [2] python3 modify_gtf

Author: gene_x

Abstract: 1. Data input and generate PCA plot # Import the required libraries library("AnnotationDbi") library("clusterProfiler") library("ReactomePA") library(gplots)

Author: gene_x

Abstract: 1. goal #p604 and p601 to sT transcript #p602 and p600 to LT transcript #p605 and p600 to LTtr transcript (or LT transcript is also fine) p602+604 compared to sT tran

Author: gene_x

Abstract: 1. prepare input reads and samplesheet ln -s ./F23A430001245_SEPiovzP/soapnuke/clean/EX_15_min_A/EX_15_min_A_1.fq.gz . ln -s ./F23A430001245_SEPiovzP/soapnuke/clean/EX_15_min_A/EX_15_

Author: gene_x

Abstract: >TODO: after annotation check if the app-gene has been truncated in 5179-R1. The 5179 generates 180 kDa and 220 kDa (isoforms) while 5179-R1 generated only a 140 kDa protein. # See the paper: Ind

Author: gene_x

Abstract: Cell free circulating DNA (cfDNA) refers to DNA fragments present outside of cells in body fluids such as plasma, urine, and cerebrospinal fluid (CSF). CfDNA was first identified in 1948 from plasma o