gene_x 0 like s 13 view s
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https://bioconductor.org/packages/release/bioc/vignettes/MicrobiotaProcess/inst/doc//MicrobiotaProcess.html
prepare the R environment
#Rscript MicrobiotaProcess.R
#NOTE: exit R script, then login again R-environment; rm -rf Phyloseq*_cache
# -- using R under base environment --
#(base) jhuang@WS-2290C:~/DATA_A/Data_Nicole8_Lamprecht_new_PUBLISHED/core_diversity_e1300
#mkdir figures
rmarkdown::render('Phyloseq.Rmd',output_file='Phyloseq.html')
bridges other tools
##https://github.com/YuLab-SMU/MicrobiotaProcess
##https://www.bioconductor.org/packages/release/bioc/vignettes/MicrobiotaProcess/inst/doc/MicrobiotaProcess.html
##https://chiliubio.github.io/microeco_tutorial/intro.html#framework
##https://yiluheihei.github.io/microbiomeMarker/reference/plot_cladogram.html
#BiocManager::install("MicrobiotaProcess")
#install.packages("microeco")
#install.packages("ggalluvial")
#install.packages("ggh4x")
library(MicrobiotaProcess)
library(microeco)
library(ggalluvial)
library(ggh4x)
library(gghalves)
library(tidyr)
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