Abbreviation: Pathogen
- Abau: Acinetobacter baumannii
- Acla: Alkalihalobacillus clausii
- Afab: Agrobacterium fabrum
- Bado: Bifidobacterium adolescentis
- Bbac: Bartonella bacilliformis
- Bbif: Bifidobacterium bifidum
- Bbur: Borreliella burgdorferi
- Bdol: Burkholderia dolosa
- Bhyo: Brachyspira hyodysenteriae
- Bpse: Burkholderia pseudomallei
- Bpum: Bacillus pumilus
- Bsub: Bacillus subtilis
- Bsui: Brucella suis
- Ccol: Campylobacter coli
- Cacn: Cutibacterium acnes
- Cbut: Clostridium butyricum
- Cdif: Clostridioides difficile
- Cgin: Capnocytophaga gingivalis
- Cjej: Campylobacter jejuni
- Cmen: Chryseobacterium meningosepticum
- Cper: Clostridium perfringens
- Cpsi: Chlamydophila psittaci
- Crei: Chlamydomonas reinhardtii
- Cstr: Corynebacterium striatum
- Ctra: Chlamydia trachomatis
- Eclo: Enterobacter cloacae
- Ecol: Escherichia coli
- Efac: Enterococcus faecium
- Efae: Enterococcus faecalis
- Hhal: Halobacterium halobium
- Hinf: Haemophilus influenzae
- Hpin: Haemophilus parainfluenzae
- Hpyl: Helicobacter pylori
- Hsal: Halobacterium salinarum
- Kaer: Klebsiella aerogenes
- Kleb: Klebsiella
- Kpne: Klebsiella pneumoniae
- Lhon: Laribacter hongkongensis
- Lmon: Listeria monocytogenes
- Lreu: Limosilactobacillus reuteri
- Mabs: Mycobacteroides abscessus
- Mavi: Mycobacterium avium
- Mbov: Mycobacterium tuberculosis variant bovis
- Mcat: Moraxella catarrhalis
- Mche: Mycobacteroides chelonae
- Mfer: Mycoplasmopsis fermentans
- Mgal: Mycoplasma gallisepticum
- Mgen: Mycoplasma genitalium
- Mhom: Mycoplasma hominis
- Mint: Mycobacterium intracellulare
- Mkan: Mycobacterium kansasii
- Mlep: Mycobacterium leprae
- Mmor: Morganella morganii
- Mpne: Mycoplasma pneumoniae
- Msme: Mycolicibacterium smegmatis
- Mtub: Mycobacterium tuberculosis
- Ngon: Neisseria gonorrhoeae
- Nmen: Neisseria meningitidis
- Paer: Pseudomonas aeruginosa
- Pmir: Proteus mirabilis
- Pmul: Pasteurella multocida
- Prop: Propionibacteria
- Pros: Planobispora rosea
- Rfas: Rhodococcus fascians
- Rsph: Rhodobacter sphaeroides
- Saga: Streptococcus agalactiae
- Samb: Streptomyces ambofaciens
- Saur: Staphylococcus aureus
- Scin: Streptomyces cinnamoneus
- Scoh: Staphylococcus cohnii
- Sent: Salmonella enterica
- Sfle: Shigella flexneri
- Sfra: Streptomyces fradiae
- Sint: Staphylococcus intermedius
- Sliv: Streptomyces lividans
- Smar: Serratia marcescens
- Smit: Streptococcus mitis
- Spne: Streptococcus pneumoniae
- Spyo: Streptococcus pyogenes
- Sris: Streptomyces rishiriensis
- Sser: Salmonella serovars
- Ssui: Streptococcus suis
- Tthe: Thermus thermophilus
- Uure: Ureaplasma urealyticum
- Vcho: Vibrio cholerae
- Vang: Vibrio anguillarum
- Yent: Yersinia enterocolitica